Clone FMO11138 Report

Search the DGRC for FMO11138

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:38
Vector:pMK33-CFH-BD
Associated Gene/Transcriptlcs-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11138.5prime Sequence

461 bp (461 high quality bases) assembled on 2011-12-01

> FMO11138.5prime
CAGTCGACATGCGTACCCTTATCCTTGTTACTCTTGTTGCCCTGGTCGCA
GTGGCCTCCGCCCAAGGACCTGGTCCTTGGGGTCCCGGTGGACCTGGTGG
ACCTGGTGGACCAGGTCGTGGTCGCGGAGGACCAGGACGTGGACCTGGCG
GACCAGGTGGCCCAGGAGGTCGCGGACCTGGAGGACCTGGAGGACCAGGA
GGCCCAGGAGGCCCAGGAGGACCAGGAGGACCAGGAGGCCCAGGAGGACC
AGGATGCCCAGGAGGACCAGGTGGACCAGGAGGCCCCAAACCATGGGGAC
CTCCATCCAACCAAACCACATCCACGACAACTGAGGCCTCAACAAGCACT
TCCACCACGACAGCTTCGTCCACTACAGTGTCCTCCACTACAGAGTCCTC
TACGGAATCCTCGACGGAATCATCCACAGCATCCTCCACAGAAGCAAGCT
TTCTAGACCAT

FMO11138.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
lcs-RA 590 CG12794-RA 33..471 5..443 2180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21396846..21397284 443..5 2180 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 00:08:14 has no hits.

FMO11138.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:13 Download gff for FMO11138.5prime
Subject Subject Range Query Range Percent Splice Strand
lcs-RA 9..457 1..447 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:29 Download gff for FMO11138.5prime
Subject Subject Range Query Range Percent Splice Strand
lcs-RA 9..457 1..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:44 Download gff for FMO11138.5prime
Subject Subject Range Query Range Percent Splice Strand
lcs-RA 26..474 1..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:44 Download gff for FMO11138.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21396842..21397285 1..447 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:29 Download gff for FMO11138.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21267869..21268312 1..447 98   Minus