FMO11140.5prime Sequence
1122 bp (1042 high quality bases) assembled on 2011-12-01
> FMO11140.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGATTGATATTCC
ATTCGATGAAGCTGACGTTGAACCTCTAAAAATTTTAAAGGCCCAGTCGA
CGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGG
GAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCA
CAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGT
TGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGC
AACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCT
CTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATG
TGAATAACTTAAGGCGTGAGGATCAGTGGCCCCCGTTCGTTTCCCAGACG
TCTGCCCGCTTAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGGCG
ACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGCGTGGCTACG
TGCTTCTTCATCGATTGTGCCATAATGTTATTGACTTCATACGCACAATT
TACAAATCCTCGTGCCTGGTGCATTTGGGTGATTCTCGGCCGCTGCTGTA
CATTTTAGCGACGTCAGCGGGGCAAACAGCATCGAGCCGCCTTCGAGGAC
TTTGCATATCATGGGAAAGCGTAGGATCGCTTATCCAGAAATCACGCCAC
CGGGCATACCGTTACCAGGTCA
FMO11140.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RC | 1791 | CG11596-RC | 104..1206 | 9..1103 | 5105 | 98.3 | Plus |
CG11596-RE | 1765 | CG11596-RE | 104..1180 | 9..1103 | 4695 | 95.9 | Plus |
CG11596-RB | 1648 | CG11596-RB | 95..1063 | 143..1103 | 4435 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1928333..1928580 | 142..389 | 1240 | 100 | Plus |
X | 23542271 | X | 1929454..1929711 | 701..955 | 1140 | 98.8 | Plus |
X | 23542271 | X | 1928998..1929170 | 387..559 | 865 | 100 | Plus |
X | 23542271 | X | 1929244..1929384 | 560..700 | 705 | 100 | Plus |
X | 23542271 | X | 1927786..1927920 | 9..143 | 675 | 100 | Plus |
X | 23542271 | X | 1929773..1929920 | 955..1097 | 280 | 87.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:32 has no hits.
FMO11140.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:14 Download gff for
FMO11140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RC | 100..1223 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:38 Download gff for
FMO11140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RC | 97..1220 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:51 Download gff for
FMO11140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RC | 97..1220 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:51 Download gff for
FMO11140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1929244..1929384 | 560..700 | 100 | -> | Plus |
X | 1929454..1929711 | 701..954 | 98 | -> | Plus |
X | 1929001..1929170 | 390..559 | 100 | -> | Plus |
X | 1927779..1927919 | 1..142 | 97 | -> | Plus |
X | 1928334..1928580 | 143..389 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:38 Download gff for
FMO11140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821812..1821952 | 1..142 | 97 | -> | Plus |
arm_X | 1822367..1822613 | 143..389 | 100 | -> | Plus |
arm_X | 1823034..1823203 | 390..559 | 100 | -> | Plus |
arm_X | 1823277..1823417 | 560..700 | 100 | -> | Plus |
arm_X | 1823487..1823744 | 701..954 | 98 | -> | Plus |