Clone FMO11140 Report

Search the DGRC for FMO11140

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11596-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11140.5prime Sequence

1122 bp (1042 high quality bases) assembled on 2011-12-01

> FMO11140.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGATTGATATTCC
ATTCGATGAAGCTGACGTTGAACCTCTAAAAATTTTAAAGGCCCAGTCGA
CGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGG
GAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCA
CAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGT
TGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGC
AACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCT
CTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATG
TGAATAACTTAAGGCGTGAGGATCAGTGGCCCCCGTTCGTTTCCCAGACG
TCTGCCCGCTTAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGGCG
ACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGCGTGGCTACG
TGCTTCTTCATCGATTGTGCCATAATGTTATTGACTTCATACGCACAATT
TACAAATCCTCGTGCCTGGTGCATTTGGGTGATTCTCGGCCGCTGCTGTA
CATTTTAGCGACGTCAGCGGGGCAAACAGCATCGAGCCGCCTTCGAGGAC
TTTGCATATCATGGGAAAGCGTAGGATCGCTTATCCAGAAATCACGCCAC
CGGGCATACCGTTACCAGGTCA

FMO11140.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RC 1791 CG11596-RC 104..1206 9..1103 5105 98.3 Plus
CG11596-RE 1765 CG11596-RE 104..1180 9..1103 4695 95.9 Plus
CG11596-RB 1648 CG11596-RB 95..1063 143..1103 4435 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1928333..1928580 142..389 1240 100 Plus
X 23542271 X 1929454..1929711 701..955 1140 98.8 Plus
X 23542271 X 1928998..1929170 387..559 865 100 Plus
X 23542271 X 1929244..1929384 560..700 705 100 Plus
X 23542271 X 1927786..1927920 9..143 675 100 Plus
X 23542271 X 1929773..1929920 955..1097 280 87.2 Plus
Blast to na_te.dros performed on 2014-11-27 00:08:32 has no hits.

FMO11140.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:14 Download gff for FMO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RC 100..1223 1..1121 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:38 Download gff for FMO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RC 97..1220 1..1121 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:51 Download gff for FMO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RC 97..1220 1..1121 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:51 Download gff for FMO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1929244..1929384 560..700 100 -> Plus
X 1929454..1929711 701..954 98 -> Plus
X 1929001..1929170 390..559 100 -> Plus
X 1927779..1927919 1..142 97 -> Plus
X 1928334..1928580 143..389 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:38 Download gff for FMO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821812..1821952 1..142 97 -> Plus
arm_X 1822367..1822613 143..389 100 -> Plus
arm_X 1823034..1823203 390..559 100 -> Plus
arm_X 1823277..1823417 560..700 100 -> Plus
arm_X 1823487..1823744 701..954 98 -> Plus