FMO11142.5prime Sequence
1117 bp (1013 high quality bases) assembled on 2011-12-01
> FMO11142.5prime
CAGTCGACATGGCTGCTAGATTCATACAGAAAATTCTCAATCAACTGGGT
TTGATTGCAGCGCGTGATGCTCCGGCGGTGACTGCGACGCCAGCAGTGAG
CCAGGTCAACGCGACTCCCGCCGCCAGCCGGTCCTACTCCTCCGGCACCA
AGAAAGTCACCCTCATCCCTGGCGATGGCATCGGACCTGAGATCTCTGCG
GCCGTGCAGAAAATCTTCACCGCCGCCAATGTCCCCATCGAGTGGGAGGC
CGTGGACGTGACCCCCGTCCGGGGACCCGACGGAAAGTTCGGCATCCCAC
AGGCCGCCATTGACTCGGTGAACACGAACAAGATCGGCCTGAAGGGTCCT
CTGATGACGCCCGTCGGCAAGGGCCATCGGTCTCTGAATCTGGCCCTGCG
CAAGGAGTTCAATCTGTACGCCAACGTGCGTCCCTGCCGCAGTCTCGAGG
GCTACAAGACGCTGTACGACGATGTGGACGTGGTCACCATCCGTGAGAAC
ACCGAGGGCGAGTACTCCGGCATCGAGCACGAGATCGTCGACGGCGTCGT
TCAGAGCATCAAGCTGATCACCGAGGAAGCCTCCAAGCGTGTGGCCGAGT
ACGCCTTCCAGTACGCCAAGAACAACAACCGCAAGAAGGTCACCGTGGTG
CACAAGGCGAACATTATGCGCATGTCCGATGGTCTCTTCCTGCGCTGCGT
CCGCGACATGGCCCAGAAGTTCCCAGAAATCCAGTTCGAAGAGAAGTATC
TGGATACGGTGTGCCTGAACATGGTCCAGAACCCCGGAAAATACGACGTG
CTGGTCATGCCCAATCTGTACGGTGATATTCTGTCTGACATGTGCGCCGT
TTGGTGGGCGGCCTCGGCCTGACGCCCTCCGGCAACATGGGCCTGAACGG
TGCCCTGTTCGAGTCTGTGCACGGAACCGCCCCCGATATTGCCGGCAAGG
ACCTGGTCCAATCCCACTGCCCTGTTTGCTGTCGGCGGTCATGATGCTGC
GCCACATGGAGCCTCCACACGGTACGCCGGATAAATCGAGGCGTTGCCGC
CTTTCGAGAACATCAAGGAGGGCAAATACTTCCACCGGGCGATTCTGGGC
GTCTTGCTAAGGTGCCT
FMO11142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0156-RD | 1395 | CG12233-RD | 106..1189 | 9..1101 | 5105 | 98.5 | Plus |
| l(1)G0156-RC | 2029 | CG12233-RC | 133..1120 | 105..1101 | 4625 | 98.4 | Plus |
| l(1)G0156-RA | 1332 | CG12233-RA | 139..1126 | 105..1101 | 4625 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19519903..19520299 | 668..272 | 1985 | 100 | Minus |
| X | 23542271 | X | 19519356..19519626 | 1079..803 | 920 | 94.6 | Minus |
| X | 23542271 | X | 19520659..19520831 | 273..101 | 865 | 100 | Minus |
| X | 23542271 | X | 19519694..19519831 | 805..668 | 690 | 100 | Minus |
| X | 23542271 | X | 19521326..19521396 | 106..36 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 8837967..8838119 | 465..617 | 330 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:08:51 has no hits.
FMO11142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:16 Download gff for
FMO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RB | 105..1195 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:47 Download gff for
FMO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 99..1189 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:58 Download gff for
FMO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0156-RD | 99..1189 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:58 Download gff for
FMO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19519340..19519625 | 804..1098 | 94 | <- | Minus |
| X | 19519696..19519831 | 668..803 | 100 | <- | Minus |
| X | 19519904..19520298 | 273..667 | 100 | <- | Minus |
| X | 19520660..19520827 | 105..272 | 100 | <- | Minus |
| X | 19521328..19521396 | 36..104 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:47 Download gff for
FMO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19413373..19413658 | 804..1098 | 94 | <- | Minus |
| arm_X | 19413729..19413864 | 668..803 | 100 | <- | Minus |
| arm_X | 19413937..19414331 | 273..667 | 100 | <- | Minus |
| arm_X | 19414693..19414860 | 105..272 | 100 | <- | Minus |
| arm_X | 19415361..19415429 | 36..104 | 100 | <- | Minus |
