FMO11143.5prime Sequence
1090 bp (993 high quality bases) assembled on 2011-12-01
> FMO11143.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGAAA
CCGTGCTCGACATTGTCGTCACCTGGAACACGCGCGACAACACCAACGAA
TCAATCTGTGAGTTCGGCATCGATGGACTGCATCAGCGAGTGAAGGCGAC
GCAAATGCCCACGAAATTCGTGGATGGTGGAGCCAAAAAGGCCACCCAGT
ATATACATCGTGTGACGCTGTCCCACCTGAAACCGAATAGCACCTATCTC
TACCACTGTGGCAGTGAGTTGGGCTGGTCCGCCACCTATTGGTTTCGGAC
GCGATTCGATCACGCCGACTGGTCGCCCTCGTTGGCGATCTACGGCGATA
TGGGCGTGGTGAATGCGGCATCCCTTCCAGCGCTGCAGCGTGAAACGCAG
AGCGGCCAGTACGACGCCATCATCCATGTGGGAGACTTCGCCTACGACAT
GGACTGGGAAAACGGAGAGGTCGGCGACGAGTTTATGCGCCAGGTGGAGA
CCATAGCCGCCTACTTACCATATATGGTGTGCGTGGGCAACCACGAGGAG
AAGTACAACTTTTCGCACTACATCAATCGGTTCAGCATGCCGGGTGGATC
GGATAACATGTTCTATAGCTTCGATCTTGGACCGGTGCACTTCATCGGTT
TTAGCACAGAAGTCTATTATTTCACTAAGTTCGGGATCAAGCAGATCGTG
ATGCAGTACGACTGGCCTGGAGCGGGGATTTGATCGAGGCCAACAGCCAG
AAAACCGGAAGAAGCGTCCCTGGATTATCACATACGGCCATCGGCCCATG
TACTGCAGCAATGACAACGGAGATGACTGTGCCATTCATGAAACATCGGT
CCGAAGGGTCTGCCCATGCTGGATTCTCCGGCCTGGAGCACCTCTTTTAT
CAGTACGGCGTAATATTGAATTGGGGCAAACGAGCACTGCTACGAACGGA
TGTGGCCATGTACACTAACCCGGTTCCATGGATCCATGGC
FMO11143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RE | 1868 | CG1637-RE | 341..1422 | 9..1084 | 4960 | 97.8 | Plus |
| CG1637-RA | 1773 | CG1637-RA | 246..1327 | 9..1084 | 4960 | 97.8 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 246..425 | 9..185 | 710 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10873136..10873479 | 655..312 | 1720 | 100 | Minus |
| X | 23542271 | X | 10872651..10873055 | 1057..656 | 1520 | 95.6 | Minus |
| X | 23542271 | X | 10873541..10873710 | 315..146 | 850 | 100 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10875242..10875479 | 654..417 | 320 | 75.6 | Minus |
| X | 23542271 | X | 10874898..10875145 | 929..681 | 265 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:00 has no hits.
FMO11143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:16 Download gff for
FMO11143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 247..1328 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:50 Download gff for
FMO11143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 238..1319 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:03 Download gff for
FMO11143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RA | 238..1319 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:03 Download gff for
FMO11143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10872635..10873055 | 656..1070 | 95 | <- | Minus |
| X | 10873136..10873479 | 312..655 | 100 | <- | Minus |
| X | 10873545..10873708 | 148..311 | 100 | <- | Minus |
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:50 Download gff for
FMO11143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10766668..10767088 | 656..1070 | 95 | <- | Minus |
| arm_X | 10767169..10767512 | 312..655 | 100 | <- | Minus |
| arm_X | 10767578..10767741 | 148..311 | 100 | <- | Minus |
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
