Clone FMO11144 Report

Search the DGRC for FMO11144

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:44
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9293-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11144.5prime Sequence

838 bp (838 high quality bases) assembled on 2011-12-01

> FMO11144.5prime
CAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAGACGGATTG
GAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATGCGAAAATT
AGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCATGCCAAGG
ACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGGATGAGAGG
AGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCCAAGGAGTA
CAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACTAGTGGACA
AGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGGGTGAGATT
CAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTGGTGGCCAA
GAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAAAAAGAAAA
AGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACCAATCTAAC
GCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGTAGCAAAAA
GAAAAAGTCCAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGC
ACGCAGGACAGAAAGAAGAAGCAAGCTTTCTAGACCAT

FMO11144.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-RB 1002 CG9293-RB 100..911 9..820 4045 99.9 Plus
CG9293-RA 1044 CG9293-RA 100..654 9..563 2775 100 Plus
CG9293-RA 1044 CG9293-RA 694..953 561..820 1285 99.6 Plus
Ing3-RA 2298 CG6632-RA 1997..2152 647..802 225 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13386757..13387114 402..45 1790 100 Minus
2L 23513712 2L 13386099..13386259 722..562 805 100 Minus
2L 23513712 2L 13386530..13386690 563..403 805 100 Minus
2L 23513712 2L 13385939..13386036 820..723 475 99 Minus
X 23542271 X 18650864..18651019 802..647 225 76.3 Minus
2L 23513712 2L 13387176..13387213 46..9 190 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:09:12 has no hits.

FMO11144.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:17 Download gff for FMO11144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RB 79..898 1..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:54 Download gff for FMO11144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RB 92..911 1..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:07 Download gff for FMO11144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RB 92..911 1..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:07 Download gff for FMO11144.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13385939..13386036 723..820 98 <- Minus
2L 13386099..13386257 564..722 100 <- Minus
2L 13386530..13386690 403..563 100 <- Minus
2L 13386757..13387113 46..402 100 <- Minus
2L 13387177..13387221 1..45 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:54 Download gff for FMO11144.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13385939..13386036 723..820 98 <- Minus
arm_2L 13386099..13386257 564..722 100 <- Minus
arm_2L 13386530..13386690 403..563 100 <- Minus
arm_2L 13386757..13387113 46..402 100 <- Minus
arm_2L 13387177..13387221 1..45 91   Minus