FMO11146.5prime Sequence
1136 bp (1007 high quality bases) assembled on 2011-12-01
> FMO11146.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACT
CATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTCGAC
ACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGCATCCACCACAA
CGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTAGCACCACC
ACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAACCGCTGTT
CCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGATGGCATCG
ATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATAAGGACTAT
GACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGTCCCGAGCC
GGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAACTGGTCACA
TACCCACTACGGATGAAATCGATGTGGATGGCGGCGATGAGGATGACAAT
GGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAACGATGGAGATAT
TACAGAGCGCGGACCGGGTGCAGGTGGCAGCAACGTGCACGAATTGGACC
CCAATACGAACGTGAAAAGCCAGCCCTCCGAAACAAAGGCCATCGATCCA
CAGCCAACGGCACGAAGTGGTCATCATGGAGCGGAGGAACGATCGCCACG
TCGAGCTTCTTCTCGCAGCCCGGAAATTCTGGCTGCTGTCATTGGGCGGT
GCCGTCGATGGCCTGCTCTGCGCCATACCTCGTGGGTCTAGTTCATCGTG
TAACGCATGGAGGAAAAAGGGACGAAGGAATCCTAT
FMO11146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RD | 1869 | CG10497-RD | 337..1455 | 9..1136 | 5170 | 98 | Plus |
| Sdc-RA | 2482 | CG10497-RA | 337..1458 | 9..1136 | 5130 | 97.7 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..1221 | 101..1136 | 4710 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398580 | 864..349 | 2580 | 100 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 21394887..21395045 | 1025..865 | 430 | 91.4 | Minus |
Blast to na_te.dros performed 2014-11-27 00:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 286..447 | 173 | 61.2 | Plus |
FMO11146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:10 Download gff for
FMO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 336..1454 | 9..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:11 Download gff for
FMO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 337..1455 | 9..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:31 Download gff for
FMO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RD | 337..1455 | 9..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:31 Download gff for
FMO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394878..21395045 | 865..1035 | 93 | <- | Minus |
| 2R | 21398065..21398580 | 349..864 | 100 | <- | Minus |
| 2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:11 Download gff for
FMO11146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282383..17282550 | 865..1035 | 93 | <- | Minus |
| arm_2R | 17285570..17286085 | 349..864 | 100 | <- | Minus |
| arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 9..101 | 100 | | Minus |
