FMO11151.5prime Sequence
1147 bp (1038 high quality bases) assembled on 2011-12-01
> FMO11151.5prime
CAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTGGCCCACAA
ACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCCACCACAGC
CCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCACCCGCCAAT
CTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATTTTCGTGTC
GGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTAGGCAAAAA
CCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTATGAAGTCAA
AGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTATTAGGATCA
CATGCAGAGGGTGTACCAGAAGTATATTACTTCGGCCCATGCGGCAAATA
CAATGCTCTTGTTATGGAGTTGCTTGGTCCATCACTTGAAGATTTATTCG
ATATTTGCGGCAGACGTTTCACTTTGAAGAGCGTACTTCTGATAGCTATA
CAATTACTCCACCGGATCGAATATGTTCATAGTCGGCACTTAATATATAG
GGATGTGAAACCAGAGAACTTTCTCATTGGCAGAACGTCAACAAAACGTG
AAAAAATTATACATATAATTGATTTCGGTTTGGCCAAAGAATACATTGAT
TTAGATACAAATAGGCATATACCATATCGGGAGCATAAATCCCTAACTGG
AACGGCACGTTATATGTCAATCAACACGCACATGGGGCGTGAGCAGTCGC
GACGCGATGATCTGGAGGCATTGGGGCATATGTTTATGTATTTCTTAAGG
GGTTCACTGCCGTGGCAAGGCCTAAAGGCTGATACACTCAAGGAGAGATA
TCAAAAATCGGTGATACGAACGAGCAACGCCCATCGAGGTGCTTTGTGAT
GGACATCCGGAAGAGTTTGCGACTTATTTGCGTTATGTACGCGGTTAGAT
TTTTTCGAAACTCCGACTATGATTTTCTGCGAGACTGTTCAAGACTTATT
CGATCGTAGGAATACACCGACGAAGGGCAGTTCGACTGGACAGGTAGACA
TGTTCCACGCCCGTCGATTCCTGCAACCTGGCCCATGAAATCATTCATTC
CACCATTAAGATCTGTCTTAAGTCCGCTAGACAATGCCAACGAGGTC
FMO11151.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RE | 3212 | CG6963-RE | 1319..2426 | 5..1105 | 5035 | 97.8 | Plus |
| gish-RA | 2677 | CG6963-RA | 464..1542 | 34..1105 | 4905 | 97.8 | Plus |
| gish-RM | 5623 | CG6963-RM | 1319..2441 | 5..1105 | 4120 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297107 | 621..891 | 1265 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 33..244 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16295668..16295820 | 354..506 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 507..621 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 242..354 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 16297173..16297335 | 887..1044 | 490 | 93.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:10:09 has no hits.
FMO11151.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:21 Download gff for
FMO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1308..2382 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:22 Download gff for
FMO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1314..2388 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:30 Download gff for
FMO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RE | 1314..2388 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:30 Download gff for
FMO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16275135..16275169 | 1..34 | 91 | -> | Plus |
| 3R | 16289631..16289839 | 35..243 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 244..354 | 100 | -> | Plus |
| 3R | 16295669..16295820 | 355..506 | 100 | -> | Plus |
| 3R | 16296662..16296776 | 507..621 | 100 | -> | Plus |
| 3R | 16296836..16297104 | 622..888 | 99 | -> | Plus |
| 3R | 16297175..16297335 | 889..1044 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:22 Download gff for
FMO11151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12100857..12100891 | 1..34 | 91 | -> | Plus |
| arm_3R | 12115353..12115561 | 35..243 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 244..354 | 100 | -> | Plus |
| arm_3R | 12121391..12121542 | 355..506 | 100 | -> | Plus |
| arm_3R | 12122384..12122498 | 507..621 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 622..888 | 99 | -> | Plus |
| arm_3R | 12122897..12123057 | 889..1044 | 94 | == | Plus |
