FMO11156.5prime Sequence
965 bp (965 high quality bases) assembled on 2011-12-01
> FMO11156.5prime
CAGTCGACATGTTGCACTCAACTTTGATTTGTGCCACGCTCCAAGCGCAG
TTACTGCGCAAGGCCAGCCGCAAGTACGAGGACGCGGAGGGCAAGCGAAA
GAATAGCAACTCGGACAAGGAGGATGCCAGCGAACAGGCGCTTATCCATG
GCCGCAACTCCATTTCCACGGCGGCAGGTTCCACCACGGACATGCAGCAT
CGCCAGCGGAAACAGCGCAATCATCTCAATAACAATAATAGTAAGCAAAA
TAGCTGTGATAAAACTGGCAACGATGACGACGACCGGGATCAGCACGAAT
CGGAGGTGTTCCTCAAGGAGGGCGGCCGCATTGTCGAGCAGCTCAAGTTA
AAGACCTTCCCCAGCAGCCCGGCCCACTCGGCGGCCTCATCGAACCAGAC
CGAACAAACCAACTCTATTGCCGCCTCCACCGCCACCGTAGATGTCCAGC
TGGCTGGCCATCCCACCGACCCGTCCGTAGGTGGCGCCTCGGAGCCACGT
GCTCCGCTGGCCGGACACGATAGCATGCACAGTCTCAATGGCAGCCTAAA
CGGAGAATCCGGACCGGTGAATGGCGCTCTCAAAGCACGGCTGGATCGTG
ATGTGAACGCGGCGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCA
CAGAAACGGGGTGCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTT
CACAATGACGTTCCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCA
TTATTCTCGCCGCTAGCAAGGACGTTTACAGCGTTATCGCTGGCGGTATT
ATTGGCCACTGCATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGT
GGCTTCCAAAATCTCAGTGCGCACTGTCACCATTGTGGGTGGCATTGTGT
TCATCGGATTCGCCATCTACGCTGTCGCCATACCTCCGGATGACATTGCA
AGCTTTCTAGACCAT
FMO11156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42542-RG | 1550 | CG42542-RG | 81..1019 | 9..947 | 4680 | 99.9 | Plus |
CG42542-RD | 2215 | CG42542-RD | 782..1680 | 49..947 | 4480 | 99.9 | Plus |
CG42542-RE | 2190 | CG42542-RE | 757..1655 | 49..947 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15200644..15201225 | 9..590 | 2910 | 100 | Plus |
3R | 32079331 | 3R | 15202023..15202204 | 590..771 | 910 | 100 | Plus |
3R | 32079331 | 3R | 15202264..15202442 | 769..947 | 880 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:10:47 has no hits.
FMO11156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:24 Download gff for
FMO11156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RG | 81..1024 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:38 Download gff for
FMO11156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RG | 81..1024 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:45 Download gff for
FMO11156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42542-RG | 81..1024 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:45 Download gff for
FMO11156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15200644..15201225 | 9..590 | 100 | -> | Plus |
3R | 15202024..15202203 | 591..770 | 100 | -> | Plus |
3R | 15202266..15202447 | 771..953 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:38 Download gff for
FMO11156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11026366..11026947 | 9..590 | 100 | -> | Plus |
arm_3R | 11027746..11027925 | 591..770 | 100 | -> | Plus |
arm_3R | 11027988..11028169 | 771..953 | 97 | | Plus |