Clone FMO11156 Report

Search the DGRC for FMO11156

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42542-RG
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11156.5prime Sequence

965 bp (965 high quality bases) assembled on 2011-12-01

> FMO11156.5prime
CAGTCGACATGTTGCACTCAACTTTGATTTGTGCCACGCTCCAAGCGCAG
TTACTGCGCAAGGCCAGCCGCAAGTACGAGGACGCGGAGGGCAAGCGAAA
GAATAGCAACTCGGACAAGGAGGATGCCAGCGAACAGGCGCTTATCCATG
GCCGCAACTCCATTTCCACGGCGGCAGGTTCCACCACGGACATGCAGCAT
CGCCAGCGGAAACAGCGCAATCATCTCAATAACAATAATAGTAAGCAAAA
TAGCTGTGATAAAACTGGCAACGATGACGACGACCGGGATCAGCACGAAT
CGGAGGTGTTCCTCAAGGAGGGCGGCCGCATTGTCGAGCAGCTCAAGTTA
AAGACCTTCCCCAGCAGCCCGGCCCACTCGGCGGCCTCATCGAACCAGAC
CGAACAAACCAACTCTATTGCCGCCTCCACCGCCACCGTAGATGTCCAGC
TGGCTGGCCATCCCACCGACCCGTCCGTAGGTGGCGCCTCGGAGCCACGT
GCTCCGCTGGCCGGACACGATAGCATGCACAGTCTCAATGGCAGCCTAAA
CGGAGAATCCGGACCGGTGAATGGCGCTCTCAAAGCACGGCTGGATCGTG
ATGTGAACGCGGCGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCA
CAGAAACGGGGTGCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTT
CACAATGACGTTCCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCA
TTATTCTCGCCGCTAGCAAGGACGTTTACAGCGTTATCGCTGGCGGTATT
ATTGGCCACTGCATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGT
GGCTTCCAAAATCTCAGTGCGCACTGTCACCATTGTGGGTGGCATTGTGT
TCATCGGATTCGCCATCTACGCTGTCGCCATACCTCCGGATGACATTGCA
AGCTTTCTAGACCAT

FMO11156.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42542-RG 1550 CG42542-RG 81..1019 9..947 4680 99.9 Plus
CG42542-RD 2215 CG42542-RD 782..1680 49..947 4480 99.9 Plus
CG42542-RE 2190 CG42542-RE 757..1655 49..947 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15200644..15201225 9..590 2910 100 Plus
3R 32079331 3R 15202023..15202204 590..771 910 100 Plus
3R 32079331 3R 15202264..15202442 769..947 880 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 00:10:47 has no hits.

FMO11156.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:24 Download gff for FMO11156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RG 81..1024 9..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:38 Download gff for FMO11156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RG 81..1024 9..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:45 Download gff for FMO11156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42542-RG 81..1024 9..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:45 Download gff for FMO11156.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15200644..15201225 9..590 100 -> Plus
3R 15202024..15202203 591..770 100 -> Plus
3R 15202266..15202447 771..953 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:38 Download gff for FMO11156.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11026366..11026947 9..590 100 -> Plus
arm_3R 11027746..11027925 591..770 100 -> Plus
arm_3R 11027988..11028169 771..953 97   Plus