Clone FMO11157 Report

Search the DGRC for FMO11157

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:57
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6999-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11157.5prime Sequence

519 bp (335 high quality bases) assembled on 2011-12-01

> FMO11157.5prime
CAGTCGACATGAAAAAAATAATTAATACATCAAAGCCAAAGCGCAAGTCC
ACTTCCATGAAAGTGGAGGAGACTAAGCTAGACGAGGCGCGCTGGGGTAA
GCCGCAGACAAAGGAAGGTGAGTCTGCAAATGGGATAGCAAATCCCTCAA
ATGACGATAAAAAGGAGCTGGCCAATTTCAAAGCCACCTTCAATTCCTGG
GCCCCCGAGAAGAAACGCGAGAAGATGCACAAGGTAGGCGTCATCTTAAT
ATCCAACATACCCCAAGGACATGGGACGGGGACTGCCTGAAAGGAAAATC
ATGAACTTTGCACAGCGTCGTCCGGCAGAGTTTTACGTGCAGCCCGGGAA
AACGCTGGCCAAGTTTTCAAAACAAAAAAAAAACAGGCTTAAGGGGTTGG
GGGGGATTTCATTTTCAAAAATTGGGGCCCAAAAAAATCCCCCCAAAACT
GAAACAAAAAACCCTTTAACCCGATGGGCAGGTCCTCCCCAATTCCGGGG
CTTGGTGGGGAAAAATGAA

FMO11157.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6999-RA 875 CG6999-RA 57..540 9..514 1625 90.7 Plus
CG32706-RA 872 CG32706-RA 68..551 9..514 1550 89.7 Plus
CG32708-RA 855 CG32708-RA 54..270 9..222 475 81.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9088423..9088751 9..344 1350 97.6 Plus
X 23542271 X 9087196..9087524 9..344 1275 96.1 Plus
X 23542271 X 9085985..9086201 9..222 450 81.6 Plus
X 23542271 X 22246721..22246841 98..215 195 79.3 Plus
X 23542271 X 22143179..22143299 98..215 195 79.3 Plus
X 23542271 X 22147910..22148030 98..215 195 79.3 Plus
X 23542271 X 22152963..22153083 98..215 195 79.3 Plus
X 23542271 X 22158008..22158128 98..215 195 79.3 Plus
X 23542271 X 22167776..22167896 98..215 195 79.3 Plus
X 23542271 X 22187491..22187611 98..215 195 79.3 Plus
X 23542271 X 22192394..22192514 98..215 195 79.3 Plus
X 23542271 X 22197295..22197415 98..215 195 79.3 Plus
X 23542271 X 22202304..22202424 98..215 195 79.3 Plus
X 23542271 X 22212449..22212569 98..215 195 79.3 Plus
X 23542271 X 22217500..22217620 98..215 195 79.3 Plus
X 23542271 X 22226694..22226814 98..215 195 79.3 Plus
X 23542271 X 22231691..22231811 98..215 195 79.3 Plus
X 23542271 X 22236686..22236806 98..215 195 79.3 Plus
X 23542271 X 22241693..22241813 98..215 195 79.3 Plus
X 23542271 X 22251703..22251823 98..215 195 79.3 Plus
X 23542271 X 22163044..22163164 98..215 180 78.5 Plus
X 23542271 X 22172762..22172882 98..215 180 78.5 Plus
X 23542271 X 22177626..22177746 98..215 180 78.5 Plus
X 23542271 X 22182614..22182734 98..215 180 78.5 Plus
Blast to na_te.dros performed on 2014-11-27 00:10:55 has no hits.

FMO11157.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:24 Download gff for FMO11157.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6999-RA 49..430 1..395 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:42 Download gff for FMO11157.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6999-RA 49..430 1..395 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:49 Download gff for FMO11157.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6999-RA 49..430 1..395 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:49 Download gff for FMO11157.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9088415..9088765 1..362 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:42 Download gff for FMO11157.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8982448..8982798 1..362 95 -> Plus