FMO11158.5prime Sequence
1141 bp (1035 high quality bases) assembled on 2011-12-01
> FMO11158.5prime
CAGTCGACATGTGGAGTCCGACGCACTGTAGTGTAACGGTGCAGCGAGCG
CGTGGGCTGCTCACCAAGGGCAAGAATGGCACCAACAACTGCTTCGTCAC
CATTGCTCTGGGCAAGGAGAAGTACCAGACGTCCGTCAAGGACAAGGCCG
AGACGAGCGTCAACTGGAACGAGGAGTGCGAACTGAAAATTCCCGATCAG
GGTAATCGCGCCGAGCTCACTTTGACCTGCCTGCACAGGAACAATCTGGG
CATCGATGAGTTCCTCGGCCAGGCGACGCTGCCGCTCAACGAGATGGATG
TGTATGACCGGCCACGCGCCAAGTGGTTCAAGCTGGAGAGCAAGCCCGGC
AAGGAGAAGAAGAACAAGGAGCGGGGCGAGCTGGAGGTGCGCATCGCCTT
CGTGGTCAAGTCCGGCTCGCTGACCGATCTCAGCAAGAAGGACAAGCACA
AGTCTTCCATTGGCCAGCTGGCCAGCTCCGTGGGTGGCAGTCTGTTGTCC
ATCGGCAACGGCGAGAAGCGGCGAGGCATCAAGAAGCTGGCTGGCTCGCT
TAGCTCTAAGCTGCACATCCGTAGCAAGAAGAAGAACCAGGAGGCGGGCG
CCGACGATAGTAGCTCCTTCGGCGGCTCCTTCGCCAGCCTGGGCACGCCC
AACAGCTCCAACGGCAGGGGCCAGAATGGTGGCAGTGGCAGGCGACGTGG
CGGCCAGCGGGCGGGCGAAGCCGATCCCGGCGTGATCAGCGAGGACGAGG
ACGAGTTTGTGTTCGACAACCTCTCGCACAAGAGCTCCGGCAGCTCACTT
AACATCCAACGCATCGGCCTGCAGCCGCCGCCAGTCGGTACGCCCAACTT
TACGCCGCGCCACCCATCGCCCCTGCTGAACAACGGAGTTAGTGGCGTCA
GAAGCGGCAGCGCGAAAGATAAATACAACAACGACACGACAGCAACTCGC
CCAGTCCCAAGTCTACGAGCGCATCATATTGGTCACGAGAGTCGGATCGC
ATGCGATCGCCCGCTCGGAGATTATCCGCCCAGCTGCCAGAAATACCGAG
GCCAGTCCGCGCGGAGACCTATGCTTATTGCCCAACTGTAATGAAACGAG
GCTCTGGCGTGCACGCAGCGCGCGGTAGGACTGGAAGACAT
FMO11158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rip11-RB | 2329 | CG6606-RB | 426..1532 | 6..1106 | 5010 | 97.8 | Plus |
| Rip11-RC | 2508 | CG6606-RC | 345..1451 | 6..1106 | 5010 | 97.8 | Plus |
| Rip11-RE | 3466 | CG6606-RE | 345..1261 | 6..922 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18639460..18640197 | 922..185 | 3660 | 99.7 | Minus |
| X | 23542271 | X | 18640258..18640411 | 192..39 | 740 | 98.7 | Minus |
| X | 23542271 | X | 18637665..18637788 | 1036..917 | 250 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:09:31 has no hits.
FMO11158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:18 Download gff for
FMO11158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RB | 335..1375 | 1..1036 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:02 Download gff for
FMO11158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RC | 339..1379 | 1..1036 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:14 Download gff for
FMO11158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rip11-RC | 339..1379 | 1..1036 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:14 Download gff for
FMO11158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18637665..18637786 | 919..1036 | 93 | <- | Minus |
| X | 18639464..18640197 | 185..918 | 99 | <- | Minus |
| X | 18640266..18640410 | 40..184 | 100 | <- | Minus |
| X | 18647190..18647225 | 1..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:02 Download gff for
FMO11158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18531698..18531819 | 919..1036 | 93 | <- | Minus |
| arm_X | 18533497..18534230 | 185..918 | 99 | <- | Minus |
| arm_X | 18534299..18534443 | 40..184 | 100 | <- | Minus |
| arm_X | 18541223..18541258 | 1..39 | 92 | | Minus |
