FMO11161.5prime Sequence
968 bp (968 high quality bases) assembled on 2011-12-01
> FMO11161.5prime
CAGTCGACATGCGTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAAT
CGCCGCAGCGGCAGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGG
AGGCGGACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTG
CCGCCGAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGA
GGACGTTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGT
GGACAGAGCACGTTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGA
GCCGCAATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGG
CTTTCAGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCA
GGCCAAGATCCCACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGG
CAGGCGGACGGGTCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAG
GGAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATC
TGTTGCAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTT
CTGCTCGTCGCTCACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCC
GCTATCGCCGCTACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGG
ACGCAGTGCAGGCGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTG
ACAAAAACGCGAAAGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCA
GCAACAGGTTCGACGGGGACGCAGTCGTAGTCGTAAGCCTACAGGTAAAA
GCGAGACAAGTGGCCAGGAGACAAACCGGACTGGATCTGGAAATAGGCAC
TTGAACTCAAATTGACATATTTTGTCTCTACTTTCTACTTACACTCTGAT
GCAAGCTTTCTAGACCAT
FMO11161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9775-RD | 2400 | CG9775-RD | 1032..1972 | 9..947 | 4610 | 99.6 | Plus |
CG9775-RE | 1966 | CG9775-RE | 732..1571 | 9..849 | 4165 | 99.8 | Plus |
CG9775-RC | 1740 | CG9775-RC | 506..1345 | 9..849 | 4165 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4639018..4639556 | 547..9 | 2695 | 100 | Minus |
3R | 32079331 | 3R | 4638438..4638841 | 947..546 | 1825 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:30 has no hits.
FMO11161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:27 Download gff for
FMO11161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1044..1995 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:56 Download gff for
FMO11161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1028..1979 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:01 Download gff for
FMO11161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9775-RD | 1028..1979 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:01 Download gff for
FMO11161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4638431..4638839 | 548..954 | 98 | <- | Minus |
3R | 4639018..4639560 | 1..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:56 Download gff for
FMO11161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 464153..464561 | 548..954 | 98 | <- | Minus |
arm_3R | 464740..465282 | 1..547 | 99 | | Minus |