Clone FMO11161 Report

Search the DGRC for FMO11161

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9775-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11161.5prime Sequence

968 bp (968 high quality bases) assembled on 2011-12-01

> FMO11161.5prime
CAGTCGACATGCGTGCCGATCTAGTGGCAAGCGGCAATGCCGCACGCAAT
CGCCGCAGCGGCAGCAGCATGCGCAATGTCCCCGCCACTAACGGTGGTGG
AGGCGGACTTCGGCAGCGGCTAGGACAGCGCCGCCCTTCTGTGGGCGGTG
CCGCCGAGCGCGTTGAGCGTCGTCAGCGACAGCAGCAGCAAGCCCCACGA
GGACGTTCCCGCTCTCAGTCCCGTTCGCGCCACCCGCAAATACAGCGTGT
GGACAGAGCACGTTCCCAAAGCCGTGGACGCAGCATTGGGCGTTCCCAGA
GCCGCAATCGCGATCGCTCCGCCCAGGGCCGAGTTCCAGTGAAACAGCGG
CTTTCAGTCAAGCACCGCCTTGGCGTGCGAACCGGCCAGAGAAACAACCA
GGCCAAGATCCCACCGCAGCGCCGGGCACCAAGCCAAATTCGAGGTGTGG
CAGGCGGACGGGTCGAGAAGCGTCGTAGTGCTCAGATTTCCCAAAAGAAG
GGAGTTTCCGCCTCGATTGCCGGACGTCAAGGACGACCACGTAGAAGATC
TGTTGCAAGAAACGCTGCTTCTAGCAGTGGGGCAGTTAACAATTCTGCTT
CTGCTCGTCGCTCACGCTCGCGCAATCGTGCTGCCGCCGTCGCTGCTGCC
GCTATCGCCGCTACTGTTCAGGGCCGGGCTAATCCTCGCCAGAGACGCGG
ACGCAGTGCAGGCGCTGCCAAGGGCAAGATCATCAGAAATGGTAAAGCTG
ACAAAAACGCGAAAGGTCAAGGCGACAAACGGTGTCAAAAGTGGCCCGCA
GCAACAGGTTCGACGGGGACGCAGTCGTAGTCGTAAGCCTACAGGTAAAA
GCGAGACAAGTGGCCAGGAGACAAACCGGACTGGATCTGGAAATAGGCAC
TTGAACTCAAATTGACATATTTTGTCTCTACTTTCTACTTACACTCTGAT
GCAAGCTTTCTAGACCAT

FMO11161.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9775-RD 2400 CG9775-RD 1032..1972 9..947 4610 99.6 Plus
CG9775-RE 1966 CG9775-RE 732..1571 9..849 4165 99.8 Plus
CG9775-RC 1740 CG9775-RC 506..1345 9..849 4165 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4639018..4639556 547..9 2695 100 Minus
3R 32079331 3R 4638438..4638841 947..546 1825 99 Minus
Blast to na_te.dros performed on 2014-11-27 00:11:30 has no hits.

FMO11161.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:27 Download gff for FMO11161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RD 1044..1995 1..954 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:56 Download gff for FMO11161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RD 1028..1979 1..954 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:01 Download gff for FMO11161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9775-RD 1028..1979 1..954 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:01 Download gff for FMO11161.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4638431..4638839 548..954 98 <- Minus
3R 4639018..4639560 1..547 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:56 Download gff for FMO11161.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 464153..464561 548..954 98 <- Minus
arm_3R 464740..465282 1..547 99   Minus