Clone FMO11162 Report

Search the DGRC for FMO11162

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42508-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11162.5prime Sequence

365 bp (365 high quality bases) assembled on 2011-12-01

> FMO11162.5prime
CAGTCGACATGGTCGGTCCATTCATGCAGGGCCTATTCTTGATTGGCATC
ATCTACTGGTATTCCAAGGGGATGATGTCCATGATCAACGACTACTACAG
AAGTGAGTTCCAGCGAAAGTTGCAGACGGAACCAGCAAAGACGAGGGCAG
AGACACCCATCAATGTGGACAACTTTATGGATTATGTTAGGGAGCTGGAC
ACTCCGGACGAGGTGGCTAGAATTCCGGCGGAAGGAACTGAATCTCCGCC
CATGGGAAACACCTATTGCCACATCCTTCGACGATTCTTGGAGATTACCG
GCACTCTACCACCATTCGATGTTTGCCTAGTTACGAGCAACATAAGAGCA
AGCTTTCTAGACCAT

FMO11162.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42508-RB 1029 CG42508-RB 525..863 9..347 1695 100 Plus
CG42508-RA 949 CG42508-RA 521..859 9..347 1695 100 Plus
Xport-RA 949 CG4468-RA 521..859 9..347 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19914486..19914824 347..9 1695 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:11:39 has no hits.

FMO11162.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:28 Download gff for FMO11162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4468-RA 510..860 1..353 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:00 Download gff for FMO11162.5prime
Subject Subject Range Query Range Percent Splice Strand
Xport-RB 495..845 1..353 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:04 Download gff for FMO11162.5prime
Subject Subject Range Query Range Percent Splice Strand
Xport-RA 513..863 1..353 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:04 Download gff for FMO11162.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19914482..19914832 1..353 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:00 Download gff for FMO11162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15740204..15740554 1..353 98   Minus