FMO11163.5prime Sequence
918 bp (917 high quality bases) assembled on 2011-12-01
> FMO11163.5prime
CAGTCGACATGCAGCTCCTGGTCGTGGCCCTGGTGGCGGTGGCCATCGCG
TCCTTGCCCCAACTGGCCGCAGGTAAAAAGCTGGGGAAGCGCTGCGTGAA
CTGCACGTACCGCACTTACTACACCTACGGCGATGGGCGATCCCTGCAGC
GGGTTGTCTATAGAGATCCGGTCTACACACGTGCGCAGTCCTACGCGAGC
GGATGCAGCGGTAGCCCGTGCGGCGTGAACGCCGTGTGCCAGGAGGCCTC
CGGAGGACGGCCCGTCTGCTCGTGCCCGCCCGGATTCAGCGGTAATCCGC
TCACCCACTGCAATCGCGGCGAGTGCCTGGACAACGTCGACTGTCGCGAC
AACCTGCAGTGCAAGGACAATCGCTGCGTTAATCCCTGCGTGGGTGCCTG
TGGCATTGGCTCCAATTGTGACGCCCGCAACCACGTGGCCGTGTGCAGCT
GCCCCGCCGGCTACAATGGCGACCCATACCACGCCTGCCACCTCAACGAT
CCGGAGGAGCAGTGCCATCCCAGTCCGTGCGGCGTTAACACCAAGTGCGA
GATCATCAACGGCGTGCCCACCTGCTCATGCGTTCACGGCTATGTGGGCA
ATCCGCTGAGCGGCTGTCGCCACGAGTGCGATCACGATGGCGACTGCAGC
AGCCGGGGACATGTGCTCCAGCAACTTCAAGTGCGTGCCGGCATGCGGGC
AGTGCGGCACTGGCGCCACCTGCCGAACGGTCAGCAATTCACCGGGCTGT
CTGCGAGTGCCCCAAGGGCTACATTTGGCAGCCCGTACACGGAGTGCCGA
CCCGGAGTGCTATGGCGATGCCGACTGCCCGGCCGGGCGACCCCGCCTGC
TTCTACGGCATCTGCAAGAACACCTGCGAGGGTGCCTGCGGCATCGGCGC
CAATTGCAACCTTGTCGG
FMO11163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9572-RB | 1664 | CG9572-RB | 136..1034 | 9..912 | 4365 | 99.2 | Plus |
| CG9572-RA | 1667 | CG9572-RA | 141..1037 | 11..912 | 4355 | 99.2 | Plus |
| CG9572-RD | 1556 | CG9572-RD | 202..926 | 183..912 | 3495 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20154197..20154600 | 504..912 | 1765 | 98.3 | Plus |
| X | 23542271 | X | 20150597..20150837 | 183..423 | 1205 | 100 | Plus |
| X | 23542271 | X | 20150064..20150236 | 11..183 | 865 | 100 | Plus |
| X | 23542271 | X | 20150945..20151026 | 423..504 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:11:48 has no hits.
FMO11163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:29 Download gff for
FMO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 134..1035 | 9..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:04 Download gff for
FMO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 136..1037 | 9..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:08 Download gff for
FMO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9572-RB | 136..1037 | 9..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:08 Download gff for
FMO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20150062..20150236 | 8..183 | 99 | -> | Plus |
| X | 20150598..20150836 | 184..422 | 100 | -> | Plus |
| X | 20150945..20151026 | 423..504 | 100 | -> | Plus |
| X | 20154198..20154603 | 505..918 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:04 Download gff for
FMO11163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20044095..20044269 | 8..183 | 99 | -> | Plus |
| arm_X | 20044631..20044869 | 184..422 | 100 | -> | Plus |
| arm_X | 20044978..20045059 | 423..504 | 100 | -> | Plus |
| arm_X | 20048231..20048636 | 505..918 | 97 | | Plus |
