FMO11165.5prime Sequence
1156 bp (1037 high quality bases) assembled on 2011-12-01
> FMO11165.5prime
CAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATGGGTATTCG
GACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGCTATGATAT
GGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGCTCTTGGCG
ATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCAAGCACAAG
GGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTCAAGGGCAT
CAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGACCACACTGG
ATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAGATGACATT
ACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAATCAGCCAA
TCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCACTGACCTTG
TGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAGGATCCGCG
GAATATGATATCGAGAAAGAAGTGTCAATTTTAAAACGACAAATAAAATC
CCATCCAGGTTCTTCGAACATGGGTCAAGATTCGGCAGCCAAAAGTCCGT
GGACCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTC
AGTGATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGG
CGCCTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTA
AGAAACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTG
AACTCCTACAAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCG
TGCTCAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCT
CCCTACTGTGTCACTGAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTC
TGTCATGGACGCACACCCATTGCGCTTGAGATGGCAAGATCGATCCATAT
GCGTTCCCAGACGCGAGCCATCTTTGAGCCTGATCGATTCGCAACGAGAA
TGACCCACGGAGCGCATCGTGATCGCCATCATCTCCGCAACGACTTGAAA
TATGACGTTCGCAATCAGCCAAAGAAAAGGAATCGAGCTTGAGGCACTCA
GCCCAA
FMO11165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RB | 2210 | CG5547-RB | 429..1550 | 9..1129 | 5190 | 98.2 | Plus |
| Pect-RE | 2144 | CG5547-RE | 429..942 | 9..522 | 2570 | 100 | Plus |
| Pect-RD | 2174 | CG5547-RD | 429..942 | 9..522 | 2570 | 100 | Plus |
| Pect-RE | 2144 | CG5547-RE | 941..1484 | 587..1129 | 2300 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13208109..13208360 | 91..342 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 687..873 | 885 | 99.5 | Plus |
| 2L | 23513712 | 2L | 13209429..13209601 | 516..688 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 13209909..13210080 | 872..1040 | 615 | 97.1 | Plus |
| 2L | 23513712 | 2L | 13208665..13208777 | 410..522 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 9..91 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 341..410 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:12:06 has no hits.
FMO11165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:30 Download gff for
FMO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 414..1549 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:13 Download gff for
FMO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 420..1555 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:18 Download gff for
FMO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 420..1555 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:18 Download gff for
FMO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| 2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| 2L | 13209436..13209599 | 523..686 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 687..873 | 99 | -> | Plus |
| 2L | 13209911..13210173 | 874..1136 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:13 Download gff for
FMO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13209660..13209845 | 687..873 | 99 | -> | Plus |
| arm_2L | 13204181..13204272 | 1..91 | 96 | -> | Plus |
| arm_2L | 13208110..13208360 | 92..342 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 343..409 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 410..522 | 100 | -> | Plus |
| arm_2L | 13209436..13209599 | 523..686 | 100 | -> | Plus |
| arm_2L | 13209911..13210173 | 874..1136 | 91 | | Plus |
