FMO11166.5prime Sequence
1131 bp (1022 high quality bases) assembled on 2011-12-01
> FMO11166.5prime
CAGTCGACATGACGGAACGACAGCCGTTGCTCCTCCAGAGCGATGCCTCT
GACTACGAGGGCAGTCGAGGATCGGCAGCACGACCCGTGCGCAGCTCTCC
GCCGGACAACACTCTCGTCAACGTGCACAGCGAGGACAGCTTAGCAGCAG
CCTCTGGATCGGGAGATGATGAAATTGGATCGACGGATAAGTCCTATAAC
CCCACCCATCATCGCGACCTGGAGCATCCGACGTCCAACTTCGATACCCT
GGTTCATCTGCTGAAGGGCAACATTGGTACGGGCATTCTGGCAATGCCGG
ATGCCTTTAAGAACGCCGGACTTTATGTGGGACTCTTTGGCACAATGATC
ATGGGAGCCATCTGCACCCACTGCATGCACATGCTGGTCAACTGCTCCCA
CGAGCTGTGCCGGAGATTCCAGCAGCCATCGTTAGATTTCTCGGAGGTGG
CATACTGCAGTTTTGAGTCGGGACCTTTGGGACTAAGACGATACTCCATG
TTGGCTCGACGAATTGTTACCACGTTCTTGTTTATCACGCAAATCGGTTT
CTGCTGCGTCTACTTCCTCTTTGTGGCGTTGAATATCAAGGACGTTATGG
ATCACTACTACAAGATGCCTGTGCAGATTTACCTGCTTATAATGCTTGGA
CCCATGATCCTGTTGAATCTGGTGCGGAATCTGAAGTATTTGACACCCGT
TTCGCTGGTTGCCGCCCTGCTCACAGTTGCCGGACTGGCCATTACATTCT
CGTACATGCTGGTGGATCTGCCGGATGTGCACACGGTCAAGCCGGTGGCC
ACTTGGGCGACGTTGCCTCTATATTTTGGAACCGCCATCTACGCGTTCGA
GGGAATTGGTGTTGTCCTGCCCTTGGAGAAAATATGCGCACACCCCGAGA
CTTTGGCGGCACACAGGTGTCCTCAACACGGGCATGGTGATCGTGGCTGC
TTGTACACAGCTGTCGGGTTCTTCGCTACCTGAAGTACGCGACACGTGGA
GGGCAGCATTACCCTAATCTGCCGCAGCGAACCACTTCCCAGGTGGGTGC
GATTCATTGCCGTTGCCATCTCCTCTCGTACGCTTCAGTTTATGTGCCCT
GGTACTCTGACTGTGGCAAGTCATTCGGATA
FMO11166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13384-RI | 2510 | CG13384-RI | 390..1495 | 9..1098 | 4955 | 97.6 | Plus |
| CG13384-RH | 2560 | CG13384-RH | 440..1545 | 9..1098 | 4955 | 97.6 | Plus |
| CG13384-RF | 2534 | CG13384-RF | 414..1519 | 9..1098 | 4955 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8386480..8387370 | 144..1027 | 4050 | 98.5 | Plus |
| 2L | 23513712 | 2L | 8386247..8386385 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:12:15 has no hits.
FMO11166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:31 Download gff for
FMO11166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RD | 549..1563 | 9..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:18 Download gff for
FMO11166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1428 | 9..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:20 Download gff for
FMO11166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13384-RF | 414..1428 | 9..1017 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:20 Download gff for
FMO11166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
| 2L | 8386484..8387359 | 148..1017 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:18 Download gff for
FMO11166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8386484..8387359 | 148..1017 | 98 | == | Plus |
| arm_2L | 8386247..8386385 | 9..147 | 100 | -> | Plus |
