FMO11167.5prime Sequence
431 bp (431 high quality bases) assembled on 2011-12-01
> FMO11167.5prime
CAGTCGACATGGGAAAGAAAGACAAGAACAAGGAACAGGCGGACGCTGCA
CCAGCTGGCGATGCACCACCCAATGCCGGAGCCCCGGCCGGAGAGGGCGG
CGATGGCGAGATTGTGGGCGGACCACACAATCCGCAGCAGATCGCGGCAC
AGAAGCGTCTGCAGCAGACGCAGGCGCAGGTCGATGAGGTCGTGGACATC
ATGCGCACGAACGTGGAGAAGGTGCTGGAGCGCGACAGCAAGCTGTCGGA
GCTGGACGACCGTGCCGATGCCTTGCAGCAGGGTGCCTCGCAGTTTGAGC
AGCAGGCGGGCAAGCTCAAGAGGAAATTCTGGCTTCAGAACTTAAAGATG
ATGATCATCATGGGCGTGATTGGCCTGGTTGTCGTGGGCATTATTGCAAA
GAAAGACGAAGAAGCAAGCTTTCTAGACCAT
FMO11167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nSyb-RI | 3570 | CG17248-RI | 527..931 | 9..413 | 2025 | 100 | Plus |
| nSyb-RH | 1277 | CG17248-RH | 527..931 | 9..413 | 2025 | 100 | Plus |
| nSyb-RG | 3027 | CG17248-RG | 530..925 | 9..404 | 1965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1635301..1635461 | 347..187 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 1635532..1635684 | 190..38 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 10250908..10251119 | 370..159 | 295 | 75.9 | Minus |
| 3L | 28110227 | 3L | 1635186..1635239 | 399..346 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:24 has no hits.
FMO11167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:32 Download gff for
FMO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RH | 533..949 | 1..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:22 Download gff for
FMO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RH | 518..934 | 1..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:22 Download gff for
FMO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nSyb-RH | 518..934 | 1..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:22 Download gff for
FMO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1635186..1635237 | 348..399 | 100 | <- | Minus |
| 3L | 1635301..1635459 | 189..347 | 100 | <- | Minus |
| 3L | 1635534..1635684 | 38..188 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:22 Download gff for
FMO11167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1635186..1635237 | 348..399 | 100 | <- | Minus |
| arm_3L | 1635301..1635459 | 189..347 | 100 | <- | Minus |
| arm_3L | 1635534..1635684 | 38..188 | 100 | <- | Minus |
