FMO11168.5prime Sequence
1130 bp (1048 high quality bases) assembled on 2011-12-01
> FMO11168.5prime
CAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCATGCC
GTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGAGGG
CGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACAAGT
TGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGCTCC
CATCCGCCACCCATCGTGGCCAACAATCCAAAGGCAGCGAATGCCAAGGC
CAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAACATATCGGCG
GCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCCGCTGGAATG
GCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAAGCAGGAAGT
CAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTGCAAGCATGA
TGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCCATTCCAATT
GTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACATCACGCTGCC
ATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCACCATACAAG
TGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATTCTGACGGCC
CACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGCCTCGTCTGT
GCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATCACCAGAAAA
CTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGACTCCTCCGATGAG
GATGAAAGCGAGGAGAGCGACGACAACATCGACACGATGACGACGATGAC
CTAGACAAGGACGATGACGAGGATGCGGAGCACGAGGATGCTGCCGAGGA
GGAGCCGCTCAACAGCGAAGACGATGTCACCGACGAAGACTCTGCCGAAA
TGTTTGACACAGATAACGTGATTGTTTGTCAGTACGAATAAGATCCACAA
GGTCGCGAAACAAAATGGAAATTCTATTCTCAAAGATGGCATCATGAACA
TGGCGGGGCAAGGACTACGGTGTCAGAAATTCGAATGGGCGACGCCCGAG
TGGGCAAAGCTTTCTGAACCATTCGTGGGC
FMO11168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-RB | 1586 | CG5930-RB | 173..1261 | 9..1103 | 5190 | 98.8 | Plus |
| TfIIA-L-RA | 1595 | CG5930-RA | 173..1270 | 9..1103 | 5090 | 98 | Plus |
| TfIIA-L-RC | 1440 | CG5930-RC | 50..1115 | 32..1103 | 5075 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27255088..27255395 | 232..539 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 27255726..27255966 | 748..987 | 1155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27255456..27255663 | 540..747 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 27254527..27254729 | 32..234 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 27256036..27256106 | 996..1069 | 205 | 94.6 | Plus |
Blast to na_te.dros performed 2014-11-27 00:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 784..868 | 114 | 61.2 | Plus |
FMO11168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:32 Download gff for
FMO11168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 164..1264 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:25 Download gff for
FMO11168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 164..1264 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:26 Download gff for
FMO11168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RB | 164..1264 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:26 Download gff for
FMO11168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27254528..27254728 | 33..233 | 100 | -> | Plus |
| 3R | 27255090..27255395 | 234..539 | 100 | -> | Plus |
| 3R | 27255456..27255663 | 540..747 | 100 | -> | Plus |
| 3R | 27255726..27255970 | 748..992 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:25 Download gff for
FMO11168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23080250..23080450 | 33..233 | 100 | -> | Plus |
| arm_3R | 23080812..23081117 | 234..539 | 100 | -> | Plus |
| arm_3R | 23081178..23081385 | 540..747 | 100 | -> | Plus |
| arm_3R | 23081448..23081692 | 748..992 | 99 | -> | Plus |
