Clone FMO11170 Report

Search the DGRC for FMO11170

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:70
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16733-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11170.5prime Sequence

974 bp (974 high quality bases) assembled on 2011-12-01

> FMO11170.5prime
CAGTCGACATGCAGCTAATTTATCGTGAACTCGAGGAGGACATACTTCGA
CGCACTAATGCAGTCTTTCCGGTACAAAATTGCTTTGTTGAGGTCCTCCC
CGATCAGTTTATCATTCCCAGAAAGTACGTGGAGCTGGGCGAATCGATTC
GATCGCTTCCCGTTTACCAGGACGACGTATGGATGGTGTCCTATCCACGA
ACCGGATCGACGTGGGCCCAGGAGATGGTCTGGCTGCTGGGTCACCAATT
GGATTACGTGGCCGCTGAGCAAGATTTAAGATTGCGATCTCCGCTCATTG
AACTATCCGCTTTGTTTAGCATCGATCATCACGAGACGGTGGCCCAAAAG
TTTGGCAATACCGTGGATCTGGTTCGCAATCTGCCACGCCCACGTTTTGC
ACGCTCCCACCTGCCGTGGCCTTTGCTACCCGAGCAATTTGAGACGGTAA
AGCCGAGGATCGTGTATACTGCTCGAAATCCCAAGGATCTTTGCGTCTCG
TACTATCACTACTTCAAGTTGCTGCACGGCATGAATGGGGACTTTGAGCA
ATTCGTGGATCTCTTCCTGGAGGGGCACACACCGATGGGATCCTATTGGC
GGCACGTCCTGCCCTTTTGGAAACGTAGCCAGGATGATAATGTGCTGTTC
ATCAAGTACGAGGACATGGTCAAGGATCTGCCCAGTGTAGTTCGCCGCTG
TGCCAGATTCCTGGGCGTTCAAAGTCTCCTCGATGTGAGCACTTTGCAGA
AATTGTGCGATCACCTCACATTCGACAAGATGCGGGCGAACAAGGCGGTG
AATCTGGGAGAAGCTGCTCCCGGAATCATCTTCCAAGTTCATACGCAATG
GCAAGATCGGGGATTGGCGCAATCACATGGGCAATGAGATGTCGGAACGC
TTTGATGAATGGACCGAGAGACATATGCGTGCTTCTGGATTAAACTTTGA
CTACGTGCAAGCTTTCTAGACCAT

FMO11170.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
St2-RB 1528 CG16733-RB 28..976 8..957 4710 99.8 Plus
St2-RA 1137 CG16733-RA 28..976 8..957 4710 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9252350..9252962 344..957 3005 99.7 Plus
3R 32079331 3R 9251870..9252205 8..343 1680 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:11:00 has no hits.

FMO11170.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:25 Download gff for FMO11170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16733-RA 11..969 1..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:45 Download gff for FMO11170.5prime
Subject Subject Range Query Range Percent Splice Strand
St2-RA 21..976 1..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:52 Download gff for FMO11170.5prime
Subject Subject Range Query Range Percent Splice Strand
St2-RA 21..976 1..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:52 Download gff for FMO11170.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9251863..9252205 1..343 99 -> Plus
3R 9252350..9252962 344..957 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:45 Download gff for FMO11170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5077585..5077927 1..343 99 -> Plus
arm_3R 5078072..5078684 344..957 99   Plus