FMO11171.5prime Sequence
987 bp (987 high quality bases) assembled on 2011-12-01
> FMO11171.5prime
CAGTCGACATGTGTAACGCCAATTGCTGTTCGAATCCCAAAGGCAAGGCT
GGCACCAAAACCGCCATCAATAATACAAATTGGCCAGATATCATACCAAC
TCCAGAAAGTCTGCTGTATCCCTATGAGGTCATCGAGGAGATCGCCGACT
TCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTGCGGC
TCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCTTCGA
GTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCATGCCG
GACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGATGCAG
GGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAATGCC
GGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACCAATG
CGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCTGATG
CATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCCAGGG
ACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAACTCGT
ACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCATGGGC
ATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTCCCAA
CTACGAGACCATCGCCGAGCTGAAAGCCCTGCGCATGATGGGCGTGGATG
CGGTGGGCATGTCCACCGTACATGAGTCATCACTGCACGGCACTGCGACA
TGAAAGTATTCGCCTTTCAGCCTCATCACAAATAAGTGCGCCACCGAGTA
CAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCTGTGG
CCAAGAACAGGCAAAGGCCTGCTGCGAACTGGTCTCCGACTCATCCGGGA
AATCCACTTGGCATCGCTTGCAGCTTTCTAAGACCAT
FMO11171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RE | 1449 | CG16758-RE | 319..1277 | 9..965 | 4670 | 99.4 | Plus |
| CG16758-RG | 1617 | CG16758-RG | 568..1445 | 90..965 | 4205 | 98.9 | Plus |
| CG16758-RF | 1245 | CG16758-RF | 196..1073 | 90..965 | 4205 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499689..2500462 | 889..116 | 3745 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2502388..2502497 | 118..9 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 2499544..2499625 | 965..886 | 310 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:10 has no hits.
FMO11171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:26 Download gff for
FMO11171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:48 Download gff for
FMO11171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:55 Download gff for
FMO11171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RE | 319..1285 | 9..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:55 Download gff for
FMO11171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499536..2499623 | 888..973 | 94 | <- | Minus |
| 3L | 2499691..2500462 | 116..887 | 99 | <- | Minus |
| 3L | 2502391..2502497 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:48 Download gff for
FMO11171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499536..2499623 | 888..973 | 94 | <- | Minus |
| arm_3L | 2499691..2500462 | 116..887 | 99 | <- | Minus |
| arm_3L | 2502391..2502497 | 9..115 | 100 | | Minus |
