Clone FMO11172 Report

Search the DGRC for FMO11172

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptUGP-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11172.5prime Sequence

1110 bp (1023 high quality bases) assembled on 2011-12-01

> FMO11172.5prime
CAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCGGCCACCAG
CGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGC
ACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGA
AGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTG
TTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGAT
TCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGC
CCAAGAACGAGCAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAG
CTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGT
GATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAA
TCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATG
AACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAA
AGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCA
TTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAG
GATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTT
CCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATT
GTTTCTTGTCCAACATCGATAACCTGGCGCCACCGTCGATCTGAACATCC
TCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTC
ATGAGGTCACCGACAGACCCGTGCTGACGTTAAGGTGGTACTCTCATTCA
AATGAAAACAAGCTGCGCTGTTGGAAATTGCTCAGTGCCACAGAGCATGT
GATGACTTTAGTCGGTAGGACCTTCAGTTCTTTAACACAACAACATTTGG
GCACTGCAGCATGATCGCGTTTTGCTTGACGTACTAACATGAATATTTGG
AACACAGAACGCTGGAAACGACCCGGTCATCACTGGAACTGGCTGTGGGT
CGCATGATGC

FMO11172.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
UGP-RD 2093 CG4347-RD 295..1340 9..1034 4710 97.9 Plus
UGP-RC 2099 CG4347-RC 295..1346 9..1034 4640 97.3 Plus
UGP-RE 2686 CG4347-RE 302..1320 36..1034 4575 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9352882..9353230 661..313 1745 100 Minus
3L 28110227 3L 9352599..9352827 887..662 995 98.7 Minus
3L 28110227 3L 9353888..9354076 222..34 945 100 Minus
3L 28110227 3L 9353738..9353831 314..221 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:11:20 has no hits.

FMO11172.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:27 Download gff for FMO11172.5prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RD 284..1346 1..1041 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:52 Download gff for FMO11172.5prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RD 288..1350 1..1041 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:58 Download gff for FMO11172.5prime
Subject Subject Range Query Range Percent Splice Strand
UGP-RD 288..1350 1..1041 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:58 Download gff for FMO11172.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9352416..9352543 885..1002 91 <- Minus
3L 9352602..9352827 662..884 98 <- Minus
3L 9352882..9353228 315..661 100 <- Minus
3L 9353738..9353829 223..314 100 <- Minus
3L 9353888..9354074 36..222 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:52 Download gff for FMO11172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9345516..9345643 885..1002 91 <- Minus
arm_3L 9345702..9345927 662..884 98 <- Minus
arm_3L 9345982..9346328 315..661 100 <- Minus
arm_3L 9346838..9346929 223..314 100 <- Minus
arm_3L 9346988..9347174 36..222 100 <- Minus