FMO11172.5prime Sequence
1110 bp (1023 high quality bases) assembled on 2011-12-01
> FMO11172.5prime
CAGTCGACATGCTGGATGTTCCACATGAAGCTAAGGTGCGCGGCCACCAG
CGTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGC
ACTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGA
AGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTG
TTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGAT
TCAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGC
CCAAGAACGAGCAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAG
CTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGT
GATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAA
TCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATG
AACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAA
AGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCA
TTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAG
GATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTT
CCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATT
GTTTCTTGTCCAACATCGATAACCTGGCGCCACCGTCGATCTGAACATCC
TCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTC
ATGAGGTCACCGACAGACCCGTGCTGACGTTAAGGTGGTACTCTCATTCA
AATGAAAACAAGCTGCGCTGTTGGAAATTGCTCAGTGCCACAGAGCATGT
GATGACTTTAGTCGGTAGGACCTTCAGTTCTTTAACACAACAACATTTGG
GCACTGCAGCATGATCGCGTTTTGCTTGACGTACTAACATGAATATTTGG
AACACAGAACGCTGGAAACGACCCGGTCATCACTGGAACTGGCTGTGGGT
CGCATGATGC
FMO11172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UGP-RD | 2093 | CG4347-RD | 295..1340 | 9..1034 | 4710 | 97.9 | Plus |
UGP-RC | 2099 | CG4347-RC | 295..1346 | 9..1034 | 4640 | 97.3 | Plus |
UGP-RE | 2686 | CG4347-RE | 302..1320 | 36..1034 | 4575 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9352882..9353230 | 661..313 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 9352599..9352827 | 887..662 | 995 | 98.7 | Minus |
3L | 28110227 | 3L | 9353888..9354076 | 222..34 | 945 | 100 | Minus |
3L | 28110227 | 3L | 9353738..9353831 | 314..221 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:11:20 has no hits.
FMO11172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:27 Download gff for
FMO11172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RD | 284..1346 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:52 Download gff for
FMO11172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RD | 288..1350 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:58 Download gff for
FMO11172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UGP-RD | 288..1350 | 1..1041 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:58 Download gff for
FMO11172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9352416..9352543 | 885..1002 | 91 | <- | Minus |
3L | 9352602..9352827 | 662..884 | 98 | <- | Minus |
3L | 9352882..9353228 | 315..661 | 100 | <- | Minus |
3L | 9353738..9353829 | 223..314 | 100 | <- | Minus |
3L | 9353888..9354074 | 36..222 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:52 Download gff for
FMO11172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9345516..9345643 | 885..1002 | 91 | <- | Minus |
arm_3L | 9345702..9345927 | 662..884 | 98 | <- | Minus |
arm_3L | 9345982..9346328 | 315..661 | 100 | <- | Minus |
arm_3L | 9346838..9346929 | 223..314 | 100 | <- | Minus |
arm_3L | 9346988..9347174 | 36..222 | 100 | <- | Minus |