Clone FMO11174 Report

Search the DGRC for FMO11174

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:74
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPif1B-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11174.5prime Sequence

1152 bp (1046 high quality bases) assembled on 2011-12-01

> FMO11174.5prime
CAGTCGACATGTACATGCAGCATGAGCGACATTCCGACAGCGACCCCAAC
TCCCGCCATCAACAAACCGAGGCATCCCACATGAGAGACCACTGGAAGCC
GTCAAAATCCCAACAGTCGCAACAATCTGATCGTGTAGACCCTCATGACA
AGCCATCGCAGACGGCGGTCTCCTTTCTGCAGAAACACCACACGCCTAAG
AACCCGGAATCGAAGGCTAATCCAGATGATGGGGCGTCCTGCTCATGCAC
CGCAAAGAGGTCCAAGTCCGCCGATCCACCAGCGGTTAAAGCTCACACCT
GTGCATGCAACACCGATCCAAGTCCATGTGGACTGGGTCATCAGGAGAAA
TCCAGTTCGAGGAAGCCCTGCTCCCAGAAAACATCGGTTACGGAACCAGA
GAAGGCTTCCTCATTCAAGAGTGCTATAACAGCGTGTACCAAGGAGCTCC
TCGATCCCTGCACTTGTGGCGCCCACCCACCATACTGGGCTGGTCAAAGC
AACTTGGTAACCGGACCATCCTACAGTAGAGCAATGGACCCCTCCTCAAG
CACTCTCGCTCCCTTGCATAGACCCGGAGCATCAAAAGGCAGCTTTGGTC
GATCCAAGAGTTTGGCCAGTCTGCCTAGTAAATCTAATCCGCCAACTCAG
AGTGGCGTCACTTGGTTGTCGGCTTTAAAGGATCCGGAGAGTACATGTTG
CTCTTCCAAAGAGGACGAACGTCCTGCATGTACCTGCAACGCTACCCAGA
CTAATCAGGATCCTTCTATGAGTTCACTTCCTCAGAGCCATCCCAATTAT
CGCAGTATGACATCCAAATCAAGTAATTTCAGGGCGCCAAACCCGCGCAA
TCAACCCTCCTTTGGGCCAGGCGATGAGACCTCAGCAACCACACGATCCC
AATCGATTGTGGGTCAGTCACCTGCCTATGCGCATCGGAGCATCAACCCA
CCAAGGCCTTTGTGTCGAGCCTGCCGATCGGGATGCCCAAATGAGATCAG
ATTGCGCCATGCCCCTCCACAAGAATAAACCATCATCCGGGTTGCCCAGT
CCCCGATTGTTCAGAACTCTCAAGCGACCCAGTACCTTCTTCGGTTCTAG
AAGTGAGCGTTAGGTTCAGAGGAATTGGAACGGATGCCTCGATACCTTCC
GA

FMO11174.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pif1A-RA 6324 CG42599-RA 2872..4001 9..1126 5225 98.2 Plus
Pif1A-RH 7694 CG42599-RH 4242..5371 9..1126 5225 98.2 Plus
Pif1A-RG 7761 CG42599-RG 4309..5438 9..1126 5225 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8776856..8777927 1074..9 4940 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 00:13:31 has no hits.

FMO11174.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:36 Download gff for FMO11174.5prime
Subject Subject Range Query Range Percent Splice Strand
Pif1B-RB 696..1825 9..1126 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:53 Download gff for FMO11174.5prime
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RG 4309..5438 9..1126 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:50 Download gff for FMO11174.5prime
Subject Subject Range Query Range Percent Splice Strand
Pif1A-RG 4309..5438 9..1126 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:50 Download gff for FMO11174.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8776798..8777927 9..1126 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:53 Download gff for FMO11174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4602520..4603649 9..1126 98   Minus