Clone FMO11176 Report

Search the DGRC for FMO11176

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15250-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11176.5prime Sequence

272 bp (272 high quality bases) assembled on 2011-12-01

> FMO11176.5prime
CAGTCGACATGAGCGATGCCTCCCTGGAACTTCCCTCTGAACTATTGAAC
AAATCTCTAGTGACGGTCACCAATATCTCAAAGTCGTTGTCTCGCCTGAT
TTTGAACTCCGCTCGCCGCTACTCCCGCTTCGTGCTCTTCTTTAAGCCAG
TTTTCGGAGATGCCCTGGTGGTCAAGGGATCTGAAGATCCCACTACAACC
ACCACAGTACGCACCACCACAACCACCGAAGAGACTGACAAGCTCAACGA
AGTCGCAAGCTTTCTAGACCAT

FMO11176.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RB 716 CG43386-RB 371..617 8..254 1220 99.6 Plus
CG1889-RA 1468 CG1889-RA 1223..1373 254..104 740 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9966714..9966864 254..104 740 99.3 Minus
X 23542271 X 9967024..9967120 104..8 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:13:50 has no hits.

FMO11176.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:38 Download gff for FMO11176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15250-RA 1..249 9..258 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:01 Download gff for FMO11176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RB 371..620 8..258 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:57 Download gff for FMO11176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RB 371..620 8..258 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:57 Download gff for FMO11176.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9966710..9966863 105..258 98 <- Minus
X 9967024..9967120 8..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:01 Download gff for FMO11176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9860743..9860896 105..258 98 <- Minus
arm_X 9861057..9861153 8..104 100   Minus