Clone FMO11177 Report

Search the DGRC for FMO11177

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42467-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11177.5prime Sequence

272 bp (272 high quality bases) assembled on 2011-12-01

> FMO11177.5prime
CAGTCGACATGAGATCGTTTTGTGTGTCTGTCTTATTAGTTACCCTTTTG
GGGATTGCGATGGCATATAGAGATTATTCGGAGAAGTGCTATCAATCCCC
TCGGTCTTATGGACCTTGTAATGTTAAGGCCCATGGATACACTTATGATT
CTCGTAGAAATGTATGTCGTCGAATTGTTCTTCGGTGTATGGCAAGGGGT
AACTATTTCTTTGACAAAGATTCCTGCGAATACACATGCTTAAAGCATAT
TCAGGCAAGCTTTCTAGACCAT

FMO11177.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42467-RA 361 CG42467-RA 18..263 9..254 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3701423..3701601 76..254 895 100 Plus
2L 23513712 2L 3701307..3701373 9..75 335 100 Plus
Blast to na_te.dros performed 2014-11-27 00:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 289..328 57..18 101 72.5 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 3069..3108 57..18 101 72.5 Minus

FMO11177.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:38 Download gff for FMO11177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42467-RA 1..249 9..255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:04 Download gff for FMO11177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42467-RA 10..263 1..254 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:01 Download gff for FMO11177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42467-RA 10..263 1..254 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:01 Download gff for FMO11177.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3701299..3701373 1..75 94 -> Plus
2L 3701423..3701601 76..254 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:04 Download gff for FMO11177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3701299..3701373 1..75 94 -> Plus
arm_2L 3701423..3701601 76..254 100   Plus