FMO11185.5prime Sequence
1150 bp (1006 high quality bases) assembled on 2011-12-01
> FMO11185.5prime
CAGTCGACATGAGAACGGAGGCAGCGGTCAGTTGTTTCCTGTTGGTATTG
CACAGGGTATGCTGTCAGAGCGGCAACGATGAGTCCTGGCTGAGTCCGGA
TCCCGCCTGGTCGGACCTGGTTAACGATATCAATCAGCCCGGTGAATTGT
GCCAGTGTCCTACGTGTCCAGATGTGTCTCCAGTGGCCATGGAGGATGCC
GTGGCACTCACATACTTCAAGAAGTTCGTCAATCTGCTGTTCCAGCGCAA
GCGTTTTCAGTACGATGTTATGTCGGCGGTCCATAAGCGATCGCTGCTCT
TCTCCCTGATCCCATCGCAACTGGATGAACTGGAGAGGGTGCAGGATGCT
CGGGATTTGGACGTTTTGCTGACTAAGATATTGGAGAGTGCCGAGGAGGC
TCCTTTGTTTAATGGAAGATCCGGATGCTCATACGTCCGACACGGCTTTT
TCTCCTTATTGGTGGATATTTTCAAGGATGTAATTGAACTGACGCAAACG
ACCGAGGTGAAATTTATCCTATATGCAACATTAGCAATTGCACTTGTCGT
CATTGTGCACAAACGTTTCCGTGTCGGACTAATTTCAATTGTACTAGGAG
GCGTGTTTCTGTGCGGATATATTCAGACTTATTTAGAATGCAACAGAGAA
TTAGACATCGATAGGATGATAGAGGTCGTAAATCATCACCATGAGCCTGA
ATCGTCCTGGTTTGGTCGACTGTTAGGCTACATATACCAAGCCTCACCAA
AAACTAAGAAGATAGAAATGATCAAAAAATCCGCAAAAATCAGCATTTCC
ATTTGCATGCCAGATCAAGTGTTCTTTATGTACATGAATAACATATTTAT
CAAGCAGTTGGAAAATCATGATAGAAAAGGTGTCGGTAACTATGACTAAA
ACTGTCCTCCGGATTATCTTCCCGTATAACCTCCTTGCAACAGTCCTTTT
GTGTTTTTAGTGGGTTTACACCATAAAAGCTGTGCTTTAAAATACATTTA
AGCCCCGAGCATGGGCGTTCACTTTACACAGCAGCGCCACAGAGGACAAC
CAACGATTCACAGTTCATTAATGCAGGCGCCAGGAATGGCACTCTCCATA
TCCGGGCGACAAACTTTAAATGTCGTCTATAATTAACGTGGAAATGTTCC
FMO11185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12945-RB | 2059 | CG12945-RB | 132..1276 | 9..1150 | 4955 | 96.6 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 382..1249 | 286..1150 | 3570 | 95.6 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 132..383 | 9..260 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9790839..9791090 | 260..9 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 9790524..9790773 | 508..259 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 9790319..9790462 | 648..505 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 9790138..9790265 | 775..648 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 9789961..9790088 | 900..772 | 580 | 98.4 | Minus |
| 3R | 32079331 | 3R | 9789712..9789871 | 1075..918 | 240 | 86.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:14:50 has no hits.
FMO11185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:42 Download gff for
FMO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 121..1203 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:36 Download gff for
FMO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 125..1207 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:22 Download gff for
FMO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 125..1207 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:22 Download gff for
FMO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9789954..9790084 | 776..908 | 98 | <- | Minus |
| 3R | 9790138..9790265 | 648..775 | 100 | <- | Minus |
| 3R | 9790320..9790460 | 507..647 | 100 | <- | Minus |
| 3R | 9790526..9790771 | 261..506 | 100 | <- | Minus |
| 3R | 9790839..9791097 | 1..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:36 Download gff for
FMO11185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5615676..5615806 | 776..908 | 98 | <- | Minus |
| arm_3R | 5615860..5615987 | 648..775 | 100 | <- | Minus |
| arm_3R | 5616042..5616182 | 507..647 | 100 | <- | Minus |
| arm_3R | 5616248..5616493 | 261..506 | 100 | <- | Minus |
| arm_3R | 5616561..5616819 | 1..260 | 98 | | Minus |
