FMO11186.5prime Sequence
1139 bp (1036 high quality bases) assembled on 2011-12-01
> FMO11186.5prime
CAGTCGACATGATTAGCACCACGGATTATCCAACAGTGGAGACCACCACA
ACTGCCGAAGAGCTCTATGCGGAGTACATATCCGCGCCGGCCAGCAGCAT
GAGTCCCGCTGCAATTGCCGAGCACCTGCAGCAGAATCAGATCACCTTCG
AGATACCCAGTGCCCACGATCTGCGACACATCGACGCCCTCAACTCCTTC
AACGCCCTGCTCCAGAGGATTGGCAACGCAGCGGTGTCCTACGATCCCGC
TCCACCCAGCGGCTGGTCTCCGGATGGCAGCATCAGCACCGAGCAGCTCT
CCAAGTCGGTGGTTCTGGATCTGGCCGACTTGCGGGATAGGTCCGAGGAA
TCGGGCGAATCCTCGTGGTGGAGCCAGATCTTCGGGGATGCCGACATGCA
TGTGATCATCAATTATCTGTGGATCGGAGTGGTCAGCTCGCTGGTCATTC
TGTCGCTGGTCTTCATCCTCTTCAGCTGCTACTTCTACAGGAAGTTCCGC
ACTTGGAAAAAATGCAATAAGGACATACGTGCCCAGATCCATGCGGCCAG
TGACTCGTACTCCTCGCACCTGGTTGGTTGCGATGCCAGCAGACTGCTGT
TGCACCAGCAGATGCAGCATCCACATCATCGGAGCAGCGAGGCTGGGTTC
TACCAAATCGAATCGCCGCCCTGCTACACAATCGCCACCGGATTGCCCAG
CTACGATGAGGCACTGCATCATCAGCCTCGGCACTTTGCCTACGGCATGA
AGTTCGTTTATCCCTCGTTGGCGGCCGTGCATCATCATCACCATTGCATT
TCCAATTGGGAGAAGCAGGAGCCGCTGAATAAGCTGCAAAAGTGCAAGCT
GTCAGCGGCAGCGGCAGTGGAGGAGGATAAAGCCGACTCCTCATCGTCCA
CGTCTGCATCCGCGTCGCCATCCTCTTCGGAATCAGCAACTTGGCCACAG
CAACGCTGCCATTTGCATAACATGCCAAGTGGGCGGCAGATGAGAGTGAT
ATCAGATTCCGATCCGCAATTGCAGTGCAGTGCAGTAGCCACAAAGGTTA
CAGGCCGGCGGCGCTGCGACGATGATGCCCTCCAATGATCGTGTGTGGCC
CGGCAGGCTTCCAGACCATCGTGGCCCCGGTCCCAGGTA
FMO11186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm-RB | 2495 | CG17943-RB | 226..1306 | 8..1076 | 5010 | 98.4 | Plus |
| comm-RA | 1678 | CG17943-RA | 226..1306 | 8..1076 | 5010 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15727692..15728205 | 521..8 | 2555 | 99.8 | Minus |
| 3L | 28110227 | 3L | 15722796..15723271 | 989..517 | 2230 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:04 has no hits.
FMO11186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:43 Download gff for
FMO11186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 343..1442 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:43 Download gff for
FMO11186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 219..1318 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:26 Download gff for
FMO11186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 219..1318 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:26 Download gff for
FMO11186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15722688..15723271 | 517..1087 | 96 | <- | Minus |
| 3L | 15727697..15728212 | 1..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:43 Download gff for
FMO11186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15715788..15716371 | 517..1087 | 96 | <- | Minus |
| arm_3L | 15720797..15721312 | 1..516 | 99 | | Minus |
