FMO11187.5prime Sequence
317 bp (317 high quality bases) assembled on 2011-12-01
> FMO11187.5prime
CAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGCCCAAGGTG
GCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGACAAACTGAA
GAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGAAGATGTGG
CTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCGCTTTCAAT
CAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCGTTGCCCGA
TAAGGAAGGAGAAGGAGAAGAATCAGTTCATCGCCGGCATCGAGAACTTG
CAAGCTTTCTAGACCAT
FMO11187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RC | 885 | CG4944-RC | 162..452 | 9..299 | 1455 | 100 | Plus |
cib-RE | 911 | CG4944-RE | 177..478 | 9..299 | 1335 | 96.4 | Plus |
cib-RD | 1502 | CG4944-RD | 423..724 | 9..299 | 1335 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4109689..4109824 | 9..144 | 680 | 100 | Plus |
X | 23542271 | X | 4109895..4110011 | 143..259 | 585 | 100 | Plus |
X | 23542271 | X | 4110161..4110203 | 257..299 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:15:13 has no hits.
FMO11187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:44 Download gff for
FMO11187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 152..456 | 1..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:50 Download gff for
FMO11187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 154..458 | 1..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:30 Download gff for
FMO11187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 154..458 | 1..305 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:30 Download gff for
FMO11187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109685..4109824 | 4..144 | 98 | -> | Plus |
X | 4109897..4110010 | 145..258 | 100 | -> | Plus |
X | 4110163..4110205 | 259..300 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:50 Download gff for
FMO11187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003718..4003857 | 4..144 | 98 | -> | Plus |
arm_X | 4003930..4004043 | 145..258 | 100 | -> | Plus |
arm_X | 4004196..4004238 | 259..300 | 97 | -> | Plus |