Clone FMO11188 Report

Search the DGRC for FMO11188

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:111
Well:88
Vector:pMK33-CFH-BD
Associated Gene/Transcriptnrv3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11188.5prime Sequence

957 bp (957 high quality bases) assembled on 2011-12-01

> FMO11188.5prime
CAGTCGACATGGCCGATAAAAAAATTGGTGAATACTATGCACCACCTGTG
AAAATGGGCAAATGGGAGGGTTTCAAAAAATTCCTATGGAACAGTGAAAC
TAGCCAATGCCTTGGACGCACCGGATCCAGTTGGGCGAAAATTCTCCTAT
TTTACATAATTTTTTATGCGGCGTTAACTGGTTTTTTTGCTGCAATTTTC
ACTGTATTTTATCAAACTTTGGACAATGAAAAGCCAAAATGGATGCTTGA
CAATGGTTTGATAGGGTCCAACCCAGGTCTAGGCTTTCGACCAATGCCAC
CGGAAGCGAATGTTGAGAGCACATTAGTTTGGTACGAGTCATCAAAGAAG
GATAACTATAAGTACTGGGTGGACGAGACTTCACGTTTTCTGAAATCGTA
CCAAGATCTTGAGAAGCAAAATCAAGTGAACTGTAGCTTTGAACATCCAC
CACAAGACGACAAGGTCTGCGGCATTGACTTCTCCAGCTTCTCGCCATGT
ACAGCTGACAACAACTTTGGCTACCACGTTGCCCGGCCATGTATATTCCT
TAAGTTGAATAAGATTTACAATTGGATACCAGAAATTTACAACGATTCTA
AGACTTTGCCAGATCATATGCCAGAGGAACTAAAACAGCACATCAAGGAA
AAGCAAAGTCTTAGGCCCAATGAAACAAATGTAGTTTGGGTCTCGTGCGA
GGGAGAAAATCCCGCTGATGTAGAGAACATAAAAGCACGCGACTACTATC
CCCGAATGGGATTTCCTCGTTACTATTTTCCGTTTAAAAACATTCAGGGA
TATATACCGCCCATTGTTGCTGTTCAATTTACCGTTGAAACCGGCGTTTT
GATCAACATTGAATGTAAAGCTTGGGCCCGCAACATTAATCACGACCGTT
CAGACAGAAGAGATCCGTTCACTTCGAGTTGATGTTGATGCAAGCTTTCT
AGACCAT

FMO11188.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
nrv3-RD 4514 CG8663-RD 415..1347 9..939 4600 99.7 Plus
nrv3-RC 1675 CG8663-RC 548..1480 9..939 4600 99.7 Plus
nrv3-RA 1519 CG8663-RA 392..1324 9..939 4600 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21388503..21388669 397..563 835 100 Plus
2L 23513712 2L 21388914..21389079 675..840 815 99.4 Plus
2L 23513712 2L 21384454..21384597 135..278 720 100 Plus
2L 23513712 2L 21382204..21382330 9..135 635 100 Plus
2L 23513712 2L 21385275..21385397 274..396 615 100 Plus
2L 23513712 2L 21388730..21388842 562..674 565 100 Plus
2L 23513712 2L 21390052..21390146 841..934 425 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 00:15:22 has no hits.

FMO11188.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:44 Download gff for FMO11188.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv3-RD 733..1677 1..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:55 Download gff for FMO11188.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv3-RC 540..1484 1..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:35 Download gff for FMO11188.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv3-RA 384..1328 1..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:35 Download gff for FMO11188.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21388914..21389079 675..840 99 -> Plus
2L 21390052..21390156 841..944 96   Plus
2L 21382196..21382330 1..135 97 -> Plus
2L 21384455..21384595 136..276 100 -> Plus
2L 21385278..21385397 277..396 100 -> Plus
2L 21388503..21388669 397..563 100 -> Plus
2L 21388732..21388842 564..674 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:55 Download gff for FMO11188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21385278..21385397 277..396 100 -> Plus
arm_2L 21388503..21388669 397..563 100 -> Plus
arm_2L 21382196..21382330 1..135 97 -> Plus
arm_2L 21384455..21384595 136..276 100 -> Plus
arm_2L 21388732..21388842 564..674 100 -> Plus
arm_2L 21388914..21389079 675..840 99 -> Plus
arm_2L 21390052..21390156 841..944 96   Plus