FMO11190.5prime Sequence
1129 bp (1017 high quality bases) assembled on 2011-12-01
> FMO11190.5prime
CAGTCGACATGAGTTCCACCGGCGGTGACAAATACCAATATCTAGCTGCA
ATCAGTGTAAACATCATTTCGATTTCGTATGGCGCTTTTTGCGGATGGCC
ATCGTCCAGTTTCCTGGAATTGTCATCAGAAAATAGTCCTTTGGATACGG
GTCCTTTGACGCCAACGGATCAGGGATGGGTGGCGTCGAATATATGCCTG
GGAGGCCTGGTGGGCACCTTTCTGTTTACCTGGCTGGCGGACAGAATCGG
CAGGAAATTGTGTCTCATGTGGATGGCGCTGCCCAATTTGCTAGGCTGGG
TGATAATACCGTTCGCGCGCACTCCCATGCATTTAATTATCGCTAGATTT
ATTGGTGGAGCCGCTGGCGGTGGATGTTTCACAGTGATTCCCATTTATAT
AGCCGAGTTAGCCTCGGACAATATTCGCGGCATTTTGGGCGTCTTTTTGG
TGCTGACCTGCAATTTCGGTCTCGTGCTGGCCTTCGTCCTTGGCTACTAC
TTCAACTATGCCCAAGTGTCCTGGATTGTGTCCTCGCTGTCCTTTGTGTT
CGTCGGCTGTTTCTGGTTCATGCCGGAAACACCGCAGCACCTGGCCAAGA
TAAACAAGATTGAGGAGGCGGAGCATTCGCTGCGCTACTACCGGAACATC
AAGTCTAATCCGGCCAAGGAACTCAGCGAGGAGCTGCAACTGGAGCTTCA
GAAGTTAAAGACCACCGAGAAGACCACTGCGGATGGAGTTGATGACGATG
ACGCGGCCACCGGCGTAACTTGGTCCGACTTCGCTGAGGGCAAGACTCGA
AAGGCATTCCTAATCGGACTCGGACTGATAAGCTTCAATCAGCTGTGCGG
ATGCTTCGCCATGCTGAACTATACGGCCGTAATTTTCGAGCAAGCTGGCT
CCAGCCTTCCGCCCACAGTGGCCGCCATCATAGTGGGTGTCATCCAACTA
ATGGGCACCTATGCATCCACCGTTTGGTGGAGCGACTGGGCCGTAAGAAT
CCTGCTCTGTCTCTGCGGTTGGAATCGGATTGGGCCAGATGCGATGGGCA
CGTTATAGCTACTTCAGATGCTCGATGCCAGTGCATCGTCAGCCTGGTTC
CATCGCTTGGATTCCCCTCTCAGCTGTTT
FMO11190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33281-RA | 1594 | CG33281-RA | 131..1257 | 9..1128 | 5190 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3325121..3325487 | 422..788 | 1820 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3324648..3324881 | 57..290 | 1170 | 100 | Plus |
| 2L | 23513712 | 2L | 3325881..3326165 | 783..1065 | 1140 | 97.2 | Plus |
| 2L | 23513712 | 2L | 3324936..3325067 | 290..421 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3324367..3324415 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:15:41 has no hits.
FMO11190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:46 Download gff for
FMO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 127..1228 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:07 Download gff for
FMO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 124..1225 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:40 Download gff for
FMO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33281-RA | 124..1225 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:40 Download gff for
FMO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3324937..3325067 | 291..421 | 100 | -> | Plus |
| 2L | 3324360..3324415 | 1..57 | 92 | -> | Plus |
| 2L | 3324649..3324881 | 58..290 | 100 | -> | Plus |
| 2L | 3325121..3325482 | 422..783 | 100 | -> | Plus |
| 2L | 3325882..3326201 | 784..1097 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:07 Download gff for
FMO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3324937..3325067 | 291..421 | 100 | -> | Plus |
| arm_2L | 3325121..3325482 | 422..783 | 100 | -> | Plus |
| arm_2L | 3324360..3324415 | 1..57 | 92 | -> | Plus |
| arm_2L | 3324649..3324881 | 58..290 | 100 | -> | Plus |
| arm_2L | 3325882..3326201 | 784..1097 | 95 | | Plus |
