FMO11192.5prime Sequence
997 bp (997 high quality bases) assembled on 2011-12-01
> FMO11192.5prime
CAGTCGACATGCAAAAGCCAGCGCTTAAACTGCGTCGACTCTTCATCATT
ACCGCAATTTATATAGCCAGTTTGCCAGGTCTCACTGTTGGGCTGCGGAA
CGTCAACGTTCGCATACCGTCCGCCGTTAAGCGTGGCGATAATGCGCTCT
TAATCTGCAATTATGACATCGAGAACGACACGCTCTACACGGTGAAATGG
TATCGTGGCAGACGGGAGTTCTACCGCTATACGCCCAAGGAAAATCCGGC
CTGGAAGATATTCACCAAAACGAACGAAATCGATGTCGAGACTGCCCAAT
CGAATGCCAGCCACGTTCTTTTGCGAAATGTTCCCACCTCAATATCGGGC
AAATTTGCCTGCGAAGTGTCCGCAGATGCACCCACCTTCGATACTTCCAT
CGTGGCCGCCGACATGGAGGTGGTTGAATTGCCCACCCAACGACCCATAA
TTACTGGCATCCATTCAAGATACCGTCTGGGGGACGTTATAAATGGGAAC
TGCTCATCGGATTACTCCAAGCCGGCTGCGAATCTCACCTGGTGGATCAA
TGACATACAGGTGCCACCCAATTATCTCCGCATCTACGACATTCAGCGGC
ACGTGGCCGAGCATCTGGAGTCGGCGGTTTTGGAGATCAAATTCGTGGTG
ACGGTACATCACTTCATCAAGAGTCGCTTAAAGTTGAAATGTTCGGCAAG
GATACACGAAATTTACGCACAGGAGAGCGAAAAATTATCGAGGAAGATCG
TCCCAGGATTCTGGCCTCTGGCAGATCACCTGATATGAATATGTATCCAT
TTGATCAGCCAGGGGATGCAGATGAGCATAACGAACTATTTTTGATCCAT
TCAAATGCGGCTTGCGGACCATTTGCCTGGCATCCGATTTTGTTTTGCTG
TTGTGGCCCAAGTTTCTGGGTTTCGCCGCCTGGAGACTGGCTGTGAACCT
GTGGAGCTCGACTTTTGGCAAGGCGTGCGGGCAAGCTTTCTAGACAT
FMO11192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Ib-RB | 2611 | CG7644-RB | 1085..2065 | 9..980 | 4620 | 98.8 | Plus |
| beat-Ib-RA | 2603 | CG7644-RA | 1077..2057 | 9..980 | 4620 | 98.8 | Plus |
| beat-Ic-RC | 4695 | CG4838-RC | 1134..1243 | 141..250 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15906549..15906806 | 683..426 | 1290 | 100 | Minus |
| 2L | 23513712 | 2L | 15908067..15908286 | 290..71 | 1085 | 99.5 | Minus |
| 2L | 23513712 | 2L | 15906318..15906491 | 854..682 | 820 | 99.4 | Minus |
| 2L | 23513712 | 2L | 15906864..15907001 | 426..289 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 15939362..15939433 | 80..9 | 360 | 100 | Minus |
| 2L | 23513712 | 2L | 15905734..15905818 | 933..850 | 265 | 95.3 | Minus |
| 2L | 23513712 | 2L | 16032442..16032551 | 141..250 | 190 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:01 has no hits.
FMO11192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:47 Download gff for
FMO11192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RB | 1076..2062 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:18 Download gff for
FMO11192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RA | 1071..2057 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:45 Download gff for
FMO11192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ib-RA | 1071..2057 | 1..980 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:45 Download gff for
FMO11192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15906864..15906999 | 291..426 | 100 | <- | Minus |
| 2L | 15908067..15908278 | 79..290 | 100 | <- | Minus |
| 2L | 15939364..15939439 | 1..78 | 94 | | Minus |
| 2L | 15905701..15905813 | 855..960 | 92 | <- | Minus |
| 2L | 15906318..15906489 | 684..854 | 99 | <- | Minus |
| 2L | 15906549..15906805 | 427..683 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:18 Download gff for
FMO11192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15905701..15905813 | 855..960 | 92 | <- | Minus |
| arm_2L | 15906318..15906489 | 684..854 | 99 | <- | Minus |
| arm_2L | 15906549..15906805 | 427..683 | 100 | <- | Minus |
| arm_2L | 15906864..15906999 | 291..426 | 100 | <- | Minus |
| arm_2L | 15908067..15908278 | 79..290 | 100 | <- | Minus |
| arm_2L | 15939364..15939439 | 1..78 | 94 | | Minus |
