FMO11194.5prime Sequence
980 bp (980 high quality bases) assembled on 2011-12-01
> FMO11194.5prime
CAGTCGACATGTTCGCCAACAAATTGTTGACCTGCTCGGCATTACTAATA
ATGTTATTTTTACTAAGCAGTACAGTGTTCTCTCAAAAGCTTATTGGCTT
GCCGAGAGTCGGTAAAAATGTTAGTGATTTGTTTCTGGAACAAGCAAACC
CACTGACCAGCAGCTCCTCAACAATCTCAACGTCTTCGACAACAACTGAG
AAACCTATCACAACCAGATCAACTTCTACAATAACTCCGAGATCTACCAC
ACCTTCAACGGAATCACCATCGACCACCGCACCAGTGATAAGCACGACCA
TTGCCCCGCAACCATATCCGCAACCATCCATTGGGGCTTGGAATACCTCT
TGTATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAG
GGAGGGAAACTTTACCACCGGTCTGTACAACATCCCCAGCAACGCATCTG
TTGAAGATGCAGAATGTAAAAGCCAGACTACTCAGTTTATTCATCTGATT
TGGGGACCAGAAACATCAAAGCAATCATTAATTATGTATTTTAATAAAAG
TAATGACACCACTGTGCTTTCCTTTATGCAAATTCATCTGGCTTTGCTGC
CTGAGGATTTTCCAGATGCAAAGGAAAATCAAACGGTTCAGCTTATTACC
AGGAGCGACGGAGCGTTTAAGACACCAGAAAATATGTCGTATCACTGCAC
TCGTGTTCAGAAGATAAATATGACTGAGACACTCGATGCTGAGCAGTTAA
TTGGTTGGATCAGCGTCAGTCATGTTCAGGTGGAGGCTTTCCGGAGGGCC
AACGACACTGGTTTCTCAGTTGGACACGATTGCGATAGCTCGGAAACTTC
GGATGTGGTTCCCATTGCCGTTGGAATTGCTTTAGCTGCATTAATTTTGG
TGGTATAATATCATATCTGTGTGCTAGGCGTCGTTCCACCTCCCGCGATT
ACATGAGCTTCGCAGCTTCTAGACCATTCG
FMO11194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lamp1-RA | 1583 | CG3305-RA | 107..1060 | 9..961 | 4730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21574785..21575113 | 74..402 | 1645 | 100 | Plus |
| 2L | 23513712 | 2L | 21576242..21576580 | 624..961 | 1630 | 99.4 | Plus |
| 2L | 23513712 | 2L | 21575964..21576186 | 402..624 | 1115 | 100 | Plus |
| 2L | 23513712 | 2L | 21573495..21573561 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:45 has no hits.
FMO11194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:57:42 Download gff for
FMO11194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3305-RA | 110..1071 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:15:32 Download gff for
FMO11194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lamp1-RA | 99..1060 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:21 Download gff for
FMO11194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lamp1-RA | 99..1060 | 1..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:21 Download gff for
FMO11194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21576243..21576580 | 625..961 | 99 | | Plus |
| 2L | 21573487..21573561 | 1..75 | 96 | -> | Plus |
| 2L | 21574787..21575113 | 76..402 | 100 | -> | Plus |
| 2L | 21575965..21576186 | 403..624 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:15:32 Download gff for
FMO11194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21573487..21573561 | 1..75 | 96 | -> | Plus |
| arm_2L | 21574787..21575113 | 76..402 | 100 | -> | Plus |
| arm_2L | 21575965..21576186 | 403..624 | 100 | -> | Plus |
| arm_2L | 21576243..21576580 | 625..961 | 99 | | Plus |
