FMO11195.5prime Sequence
1009 bp (1009 high quality bases) assembled on 2011-12-01
> FMO11195.5prime
CAGTCGACATGGATGCAACATCAATAATAACGCAAGTTTCCCGCGACGAC
GAGCAACTGAACGTCTATCCCAGCTATCCCAATGACAAAGACGATGTGGA
TCGTTTAAAGCCACAGAAGCGAGGATTATTCCATTCTCTGCTTTGCTGCT
GGCGACGAAACCGAACGAAAACCAACCAGAATGGCACACAAATCGATGGA
TCGACAACACCGCCACCATTACCGGACCAACAAAGGTACCTACTACCTCA
GGTTAGGCTTACCGATATGCACAGAAAGTGCATGGTGATCGATTTGGATG
AGACCCTAGTGCACAGTAGTTTTAAGCCCATACCGAATGCTGATTTCATA
GTGCCCGTGGAGATCGATGGAACCGTACATCAGGTGTACGTCCTGAAGCG
ACCGCACGTGGACGAGTTTCTGCAGAAGATGGGCGAACTATACGAGTGCG
TTCTGTTCACAGCATCACTAGCCAAATACGCAGATCCCGTCGCCGATCTG
TTAGACAAGTGGAATGTGTTTCGTGCAAGACTGTTTAGGGAATCATGCGT
TTATTACAGGGGTAATTACATTAAGGATCTGAATCGTCTGGGGCGGGACC
TTCAGAAGATTGTCATTGTCGACAATTCACCGGCCAGTTATATCTTTCAT
CCAGACAATGCAGTTCCTGTTAAATCCTGGTTTGACGATGTCACCGACTG
CGAACTGCGCGAACTGATCCCGCTCTTTGAGAAGCTTAGCAAAGTTGATT
CCGTCTACTCGGTGCTCTGCAATTCGAACCAGCCGCTGAACAATCAGACA
AACCAGCAGCAGCATCCCCAGGAACTGCAGCAGGCGCCGAACCAGCTGCA
TCAGCAGCTCCCACAGCAGCAACAACAACAGACCATCTCTGCCACGACAG
TTATTACCCAGGCAACCACATTGTCTGCTCCGACCATGTTGACCAGCAGC
AGACAGTCCGCCCAGCCACAAAGCGAGTTGCTGCAAAGACGCAAGCTTTC
TAGAACCAT
FMO11195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5830-RA | 3534 | CG5830-RA | 483..1464 | 9..987 | 4820 | 99.6 | Plus |
| CG5830-RB | 3603 | CG5830-RB | 634..1533 | 91..987 | 4410 | 99.6 | Plus |
| CG5830-RB | 3603 | CG5830-RB | 483..567 | 9..93 | 425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15994739..15995066 | 987..663 | 1475 | 98.8 | Minus |
| 3L | 28110227 | 3L | 15995610..15995847 | 326..89 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 15995355..15995541 | 511..325 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 15995133..15995288 | 664..509 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 16003899..16003980 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 778..905 | 222 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6924 | 790..997 | 220 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2510 | 778..952 | 215 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6918 | 776..920 | 215 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2465 | 800..952 | 207 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6832 | 776..881 | 206 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6850 | 776..881 | 199 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6923 | 798..879 | 196 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6910 | 776..881 | 187 | 65.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1152 | 803..899 | 185 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6907 | 776..900 | 180 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2557 | 802..907 | 161 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2476 | 776..880 | 156 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2721..2833 | 778..888 | 146 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6866 | 828..978 | 146 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1497..1576 | 798..880 | 145 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2818..2922 | 778..879 | 140 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2374 | 806..880 | 137 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 841..986 | 137 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2851 | 819..920 | 136 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1595 | 842..920 | 133 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2893..2986 | 786..880 | 130 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6799 | 823..900 | 126 | 65.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 967..1010 | 838..881 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1594 | 802..841 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2348 | 839..881 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2816..2971 | 798..951 | 113 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2457 | 845..996 | 111 | 55.2 | Plus |
FMO11195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-01 08:56:43 Download gff for
FMO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 482..1471 | 9..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:09:28 Download gff for
FMO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 483..1472 | 9..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:17 Download gff for
FMO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 483..1472 | 9..994 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:17 Download gff for
FMO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16003899..16003980 | 9..90 | 100 | | Minus |
| 3L | 15994731..15995066 | 663..994 | 98 | <- | Minus |
| 3L | 15995135..15995288 | 509..662 | 100 | <- | Minus |
| 3L | 15995358..15995539 | 327..508 | 100 | <- | Minus |
| 3L | 15995610..15995845 | 91..326 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:09:28 Download gff for
FMO11195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15988710..15988945 | 91..326 | 100 | <- | Minus |
| arm_3L | 15996999..15997080 | 9..90 | 100 | | Minus |
| arm_3L | 15987831..15988166 | 663..994 | 98 | <- | Minus |
| arm_3L | 15988235..15988388 | 509..662 | 100 | <- | Minus |
| arm_3L | 15988458..15988639 | 327..508 | 100 | <- | Minus |
