FMO11201.5prime Sequence
1132 bp (1023 high quality bases) assembled on 2011-12-02
> FMO11201.5prime
CAGTCGACATGGACGAGTCGCAACCGAAGACCCTATACGTGGGCAACCTG
GATAGCTCAGTGTCCGAGGACCTGCTAATTGCCCTCTTCAGCACCATGGG
GCCCGTCAAAAGCTGCAAAATCATTCGGGAACCGGGCAACGATCCATATG
CCTTCATCGAATATTCCAACTACCAGGCAGCCACAACAGCTCTGACCGCC
ATGAATAAACGCCTATTCCTCGAAAAGGAAATCAAGGTCAACTGGGCCAC
CAGTCCCGGCAATCAGCCGAAGACAGACATCAGTTCGCACCACCACATAT
TCGTGGGCGACCTCAGTCCCGAGATTGAGACAGAAACACTGCGCGAGGCT
TTCGCCCCATTCGGAGAGATCTCCAACTGTCGCATTGTGCGCGACCCTCA
CACCATGAAGTCAAAGGGTTACGCCTTCGTGTCGTTTGTGAAAAAGTCGG
AGGCAGAGAACGCCATCCAGGCGATGAACGGCCAGTGGATTGGCTCGCGC
TCGATACGCACCAACTGGTCCACGCGCAAGCTGCCACCACCACGCGAGCC
TTCCAAGGGCGGAGGCCAGGGAGGCGGAATGGGTGGCGGACCGGGCAATG
GGTCCGGTGTAAAGGGAAGTCAACGCCACACCTTCGAGGAAGTGTATAAC
CAGTCGAGCCCCACCAACACCACCGTATACTGTGGCGGATTCCCGCCGAA
TGTCATCAGTGACGACCTGATGCACAAGCACTTCGTCCAGTTTGGTCCCA
TCCAGGACGTGCGGGTCTTCAAGGACAAGGGCTTCTCGTTCATCAAGTTT
GTTACCAAAGGAGGCAGCCGCCCACGCCATCGAGCACACGCACAACAGCG
AGGTACATGGAAACTTGTAAAGTGCTTCTGGGGCAAAGAGAACGGAAGCG
ATACTCGGCCAATAACCTCAATGCCGCCGCTGCCGCGGCAGCAGCCTCTG
CCAATGTGCCGCCGTTGCGCAGCCAATGCTGCGTTGCCCGCTGGAGCGGG
TATGCCCGGGTCAGATGATGACGCCAACAACAGATCGCCGCCGCACCAGG
GAGCGGGCGGATACCCGGGCAATTGATGAACCCCCAGCAGATTGCCGGCG
CCAGTATTCCTATACCCGTACCAGACGAATGG
FMO11201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rox8-RH | 3370 | CG5422-RH | 1049..2159 | 8..1124 | 5060 | 97.7 | Plus |
| Rox8-RG | 3328 | CG5422-RG | 1007..2117 | 8..1124 | 5060 | 97.7 | Plus |
| Rox8-RE | 3222 | CG5422-RE | 901..2011 | 8..1124 | 5060 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24044410..24045268 | 1095..235 | 3665 | 97.3 | Minus |
| 3R | 32079331 | 3R | 24045436..24045666 | 238..8 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:38 has no hits.
FMO11201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:28 Download gff for
FMO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RF | 639..1753 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:23 Download gff for
FMO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 897..2011 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:20 Download gff for
FMO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 897..2011 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:20 Download gff for
FMO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24045438..24045670 | 1..236 | 98 | | Minus |
| 3R | 24044385..24045266 | 237..1124 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:23 Download gff for
FMO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19870107..19870988 | 237..1124 | 97 | <- | Minus |
| arm_3R | 19871160..19871392 | 1..236 | 98 | | Minus |
