FMO11202.5prime Sequence
899 bp (881 high quality bases) assembled on 2011-12-02
> FMO11202.5prime
CAGTCGACATGTCGACCAGCCCGAAACCGGTTAAGAAGGTGCCGATTCAC
TTGCAGAGTGCCCAGAATCGCGTCTACATCAAGAATGGCGAGATCGTCAA
CCATGACAAGTCCTTCAAAGCGGACGTGTACATCGAAGATGGAATTATCA
AGTTTGTGGGTCCCTCCTCGGAAATAACGATACCTGGCGGAGTGCGCACC
ATCGACGCCAGCGGACTGATGATCATTCCCGGAGGCATCGATCCCCACAC
CCACATGCAGTTGCCTTTCGGCGGAGCCGTGGCCGTCGACGATTTCTACC
ATGGAACCAAGGCCGCCGTGGCAGGTGGCACCACCATGATCATCGACTTC
GTTCTGCCCAACAAACATGAGTCGATGATCGAGGCCTACGACAAGTGGCG
CAGCTGGGCCGATCCTAAGGTATGCTGCGACTACGGATTGCATGTGGGCA
TCACCTGGTGGTCGAAGTCGGTGTCTGAGGAGATCGGCATTCTGTGCAAA
GAGCTTGGAGTGAACTCCTTCAAAACATTCATGGCCTACAAAGGACTTTA
TCAGTTGAATGACTCAGACCTTCTGGATGTGTTCGAGCGTATCAGGCACC
TAAATGGGGTTGCTATGGTCCACGCGGAGAATGGCGACATCATTGCAAAG
AACACGCAGCGCCTTTTGGCCGAGGGCATCAATGGTCCGGAGGGTCACGA
GCTGTCGCGGCCCGAGGAGGTCGAGGCCGAGGCGGTGCACCGCGCCTGCG
TCCTGTCCCACCAGGTAAGACCACTCCCATGTCGCCAGACAGTGGGGGAT
GGATGGGAAGAGGGAGGAAAGGAGGAGCCGTACTGTGTCCATGCCGGTTG
ATTGCCATTGTGCATTGTGCCCCGAACTGGCAGCCTTCCAAGAACATTC
FMO11202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CRMP-RE | 2590 | CG1411-RE | 133..890 | 8..765 | 3775 | 99.9 | Plus |
| CRMP-RB | 2814 | CG1411-RB | 133..890 | 8..765 | 3775 | 99.9 | Plus |
| CRMP-RA | 2575 | CG1411-RA | 133..889 | 8..764 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5575778..5576039 | 617..879 | 1145 | 96.6 | Plus |
| 3R | 32079331 | 3R | 5574663..5574853 | 152..342 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 5575239..5575375 | 418..554 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 5574261..5574341 | 8..88 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 5574913..5574991 | 343..421 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 5574402..5574468 | 87..153 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 5575434..5575500 | 553..619 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:17:48 has no hits.
FMO11202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:29 Download gff for
FMO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RC | 126..1003 | 1..879 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:28 Download gff for
FMO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RB | 126..894 | 1..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:25 Download gff for
FMO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CRMP-RB | 126..894 | 1..770 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:25 Download gff for
FMO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5574254..5574340 | 1..87 | 95 | -> | Plus |
| 3R | 5574403..5574466 | 88..151 | 100 | -> | Plus |
| 3R | 5574663..5574853 | 152..342 | 100 | -> | Plus |
| 3R | 5574913..5574989 | 343..419 | 100 | -> | Plus |
| 3R | 5575241..5575375 | 420..554 | 100 | -> | Plus |
| 3R | 5575436..5575498 | 555..617 | 100 | -> | Plus |
| 3R | 5575779..5576039 | 618..879 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:28 Download gff for
FMO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1401501..1401761 | 618..879 | 96 | | Plus |
| arm_3R | 1399976..1400062 | 1..87 | 95 | -> | Plus |
| arm_3R | 1400125..1400188 | 88..151 | 100 | -> | Plus |
| arm_3R | 1400385..1400575 | 152..342 | 100 | -> | Plus |
| arm_3R | 1400635..1400711 | 343..419 | 100 | -> | Plus |
| arm_3R | 1400963..1401097 | 420..554 | 100 | -> | Plus |
| arm_3R | 1401158..1401220 | 555..617 | 100 | -> | Plus |
