FMO11204.5prime Sequence
1059 bp (1048 high quality bases) assembled on 2011-12-02
> FMO11204.5prime
CAGTCGACATGGGCAACGCCAGCTCCTCCGTGCACATGCAACGCGAGCGC
CACAAGTCGACCGACTTGTCCACGCCGAGCTCTCCCGCACATTTCCGCGA
TTCGATTGGTGGAGGAGGAGCGGGACAGGGCGGGAGTGCTGGCGCAGCAG
CTCTGGGCGCTGCAGCGGGGGCGGTGGGAGCTGCGGGGGGTGGAGGAGGA
GGCGGCGGAGGCCAAGCTTTCTCGTTCGACAAAAAACATACGGCAGTCTT
GAACGAGGGCTCGTCGCAAGAAGACGACGACCCGTACTACACGGGAACTG
GAACTGGATCCACTAGACGAGGCACCGCACACGACGACGCTACATCAGCT
GTTACCCGAGACCACTCCAGCATGGACAACAACGAGGAGGAGGAGGAGGC
AGCGGTAGGAGCGGAGCCAGCGACTGGATCTCAGTTAACCGGCGATGAGG
ACGACATCCGGAAGACGGCACTGCCCACAGTTCTGCGGTGGGACGGCGGC
GGCAAGAACGTCACCATCTCGGGCACATTCTCCGATTGGAAGCCCATGGC
CATGGTGCGCAGCCATCAGAACTTCGTGACCATCATAGATCTGCCGGAGG
GCGACCATCAGTACAAGTTCTGCGTGGACGGCGAGTGGAAGCACGATCCC
AAGCTGAAAAGCGTGGAGAACGCCGAGGGACAGAGAAATAACTTAGTGTC
CGTGCGAGAATCCGATTTCGAGGTGTTCCAGGCCCTAGCCAAAGACAGCG
AGAACGTGACCAACTATGCGGAGAAGGAGTACTCGCAGGAGGTGCCGCAA
GGTGAAGCCCTGGGAGAAGGTATCTGGCCCGCCCGTTCTGCCGCCCCATC
TGCTCCAGGTCATCCTCAACAAGGATACACCGCTATCGTGTGAACCCACT
CTGCTGCGGAACCCACCACGTGATGCTTAACCACTTGTACGCCCTTGTCT
ATCAAGGATGGCGTCCTGGTCCTGATTGCCACGCCACAGGATTCGCAAGA
AGTACGTCCCCACGGCTGCCTGTTACAAGCCCCATTTGGCAAGCTTTTCC
TTAACCATT
FMO11204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-RA | 1544 | CG8057-RA | 334..1364 | 8..1042 | 4850 | 98.5 | Plus |
| alc-RB | 981 | CG8057-RB | 1..801 | 238..1042 | 3700 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9136952..9137600 | 656..8 | 3230 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9135765..9135996 | 888..656 | 1115 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9135580..9135706 | 1014..888 | 370 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:18:07 has no hits.
FMO11204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:30 Download gff for
FMO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 344..1383 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:39 Download gff for
FMO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 327..1366 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:31 Download gff for
FMO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 327..1366 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:31 Download gff for
FMO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9135765..9135995 | 657..888 | 99 | <- | Minus |
| 2R | 9136952..9137607 | 1..656 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:39 Download gff for
FMO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5023270..5023500 | 657..888 | 99 | <- | Minus |
| arm_2R | 5024457..5025112 | 1..656 | 99 | | Minus |
