FMO11205.5prime Sequence
1114 bp (1018 high quality bases) assembled on 2011-12-02
> FMO11205.5prime
CAGTCGACATGGACGAAGAGGAGGAGGAGGAGGTTACGGATCTAAAGCTG
CAATTGTTCCACAATACAGTACGCGAGCACATTATATTCTTGCTACTGAT
AATCTTGCTGTACTCCAGCTCCTATGTGGTCGTCTCACGTTTTAGGCGGC
GCGACCGTGACGATCTCTATTCGAATGACGAGGACGAGGTGCTGGTCTAT
CGCATAAGCTTTTGGCTGTGCACATTCACACTGGCCGTTGCCGAAGGGGC
TGCCATGCTGCTGCCCGTTTCCATTGCCAGCAATGAGGTGCTACTCCTCT
ATCCCAACAGTTACTATGTGAAATGGCTAAACAGTTCACTCATACAGGGC
TTGTGGAACCATGTATTTCTGTTCTCCAATCTGTCACTGTTCATCTTCCT
GCCATTTGTCTATTTGTTCTCGGAATCCACGGGATTCGTCGGCAACAAGA
AGGGCATCCTGCCGCGAGTCTACGAAACCTTTACAGTATTTATGCTGATG
GCCATTATTGTCCTCGTACTAACTGCCGTCCTAAGTGCAGTCTTTGGCAT
TGAAAAGCTTCAATTCTTCTGGTTTCTAAATTTGGGCAGTGTTCACCTGC
CGTTTCTTTATTCGTGTGTCTCGTTTTTGGGTGTCATGCTTATGCTGATT
TGCACCCCGTATGGCTTTGTGCGCCTCTTTGGCGTTGTTAACCAGGTGCT
GGTGCGACCTATGCTACTGCGCGACGTCAACGAGGAGTTTAGCGCCTTCT
ACATGGAGGAGGCGAGCGTGAAGCGGAAGCTAGCGCACATTGAGCTGCAC
AACGTGAGCATTGCGGATGCCGCCAACGGAGGTCGCCTTGGCAATCGGAT
TGGTCTGGGACGTGGGCGCACCTTCTATCCCCAGCCCACTGCTGCAACAC
TCCCAGGCTCATCTATACCAGCGCAAGGCGATGGCCAGTGACGTGGACGA
GCTCACGATAGACTAGAGACTGGACTCCGGCGCAAGGAACTAGACAGCTG
CCCACATCGAGCACCTTCAACGCACATTCGTCTATCCGCTGGCATGCTGC
TGCTGCCTTCGCAGCGGCCATTCGTGTTGGCGAATAGCTAAGCTATGATA
GAAGCTCGGTATTA
FMO11205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5807-RB | 2035 | CG5807-RB | 362..1416 | 8..1056 | 5065 | 99.1 | Plus |
| CG5807-RA | 2690 | CG5807-RA | 362..1416 | 8..1056 | 5065 | 99.1 | Plus |
| CG6980-RA | 927 | CG6980-RA | 847..915 | 648..580 | 345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24807067..24807480 | 1056..649 | 1660 | 97.8 | Minus |
| 3R | 32079331 | 3R | 24808815..24809046 | 579..348 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 24809105..24809247 | 349..207 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24809362..24809486 | 208..84 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 24813576..24813651 | 83..8 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 24808597..24808665 | 648..580 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:18:21 has no hits.
FMO11205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:31 Download gff for
FMO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 372..1445 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:45 Download gff for
FMO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 356..1429 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:37 Download gff for
FMO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 356..1429 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:37 Download gff for
FMO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24808597..24808665 | 580..648 | 100 | <- | Minus |
| 3R | 24807054..24807480 | 649..1068 | 96 | <- | Minus |
| 3R | 24808815..24809045 | 349..579 | 100 | <- | Minus |
| 3R | 24809106..24809245 | 209..348 | 100 | <- | Minus |
| 3R | 24809362..24809486 | 84..208 | 100 | <- | Minus |
| 3R | 24813576..24813657 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:45 Download gff for
FMO11205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20632776..20633202 | 649..1068 | 96 | <- | Minus |
| arm_3R | 20634319..20634387 | 580..648 | 100 | <- | Minus |
| arm_3R | 20634537..20634767 | 349..579 | 100 | <- | Minus |
| arm_3R | 20634828..20634967 | 209..348 | 100 | <- | Minus |
| arm_3R | 20635084..20635208 | 84..208 | 100 | <- | Minus |
| arm_3R | 20639298..20639379 | 1..83 | 96 | | Minus |
