FMO11206.5prime Sequence
1142 bp (1024 high quality bases) assembled on 2011-12-02
> FMO11206.5prime
CAGTCGACATGAGCACCCTGCGACCCGTCAGCGTTTGCGATACCACGCCG
CTCCAGAGATTCGAGAGCCAGAGCAGCAGCGGTGAAGAGCCTTCTTCGCC
GACGGCTTCCAGTATTATAGCCGCCGCTTCAGGCCCCAATCACAACAACA
ACAACAATGTGAAACTTGACCTGCAGCTGCCCACCTTCGTTGATAGCACC
CGTAGCCAGGGTTCACTGTACGCGGTAGCCAGCAACAAGAAGCCACCGCT
GCGTGGACCACGACAAATCTTCGGAAGGATCCTCACGGACCTCTGTTTGC
TCAGCTGCGTTGGTCTACCTATGCTGGGATTTTCGCTTTGGGGCGAAGCG
GTTAAGCGCGGATTCTTCTGCGATGATTCCTCCTTGAGGCATCCATATCG
AGACTCCACCATGCCCAGTTGGATTCTCTACTTGATGTGTGGCGCCTTGC
CTCTTACTGTGATGCTTGTGGTGGAGTTCTTTAGAGGACAGGACAAGCGA
TTGCACAGTCCATTTCCGAAGAGCACGATGTGCAGTGGCTATCATCTGTG
CCACTTGGAGCTGCCCACTTGGCTGGTGGAGTGCTACCACAGGATGGGTA
TCTTTATCTTCGGATTGGGCGTAGAGCAGCTATCCACGAACATCGCCAAG
TATTCCATTGGACGGCTGAGACCTCACTTCTACACACTCTGTCAGCCCGT
CATGAAAGATGGCACCACTTGCAGTGATCCCATTAACGCTGCTCGTTACA
TCGAGGAGTTCACCTGTGCGGCGGTGGACATTACATCGAAGCAGCTAAAG
GACATGCGCCTGTCCTTTCCCAGTGGACATGCTAGCTTCGCCTGCTACTC
CATGCTCTACTTGGTGATTTACCTACATCGTAGATGCAATGGAAGCAGTT
GAGATGCTGTGCCACCTGCTTCAGTTCCTGCTGCTCATGTTCGCCTGGTA
TACGGCTTCTCACAGAGTTTCCGACTACAGCACCATTGGTCCGATGTCTG
CAGGATCTGCATCGGACTGAACTACGCAGTCGTGTGACATCGACTATGTG
GGGCAAGCTTTCTAGACATTCGGTTTGGCGCGCCGGCCAGTTAATGGTCA
TATTCAATCAATCAATTCATAATCTCCCACTAGCCTAGAAAT
FMO11206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun2-RA | 1968 | CG8805-RA | 720..1769 | 9..1051 | 5010 | 99 | Plus |
| wun2-RB | 2211 | CG8805-RB | 1263..2012 | 309..1051 | 3510 | 98.5 | Plus |
| wun2-RB | 2211 | CG8805-RB | 720..1020 | 9..309 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9415061..9415361 | 9..309 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 9416857..9417082 | 461..686 | 1115 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9417156..9417335 | 687..866 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 9416644..9416796 | 309..461 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 9417394..9417567 | 866..1033 | 515 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:26 has no hits.
FMO11206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:32 Download gff for
FMO11206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 712..1773 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:48 Download gff for
FMO11206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 714..1775 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:39 Download gff for
FMO11206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 714..1775 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:39 Download gff for
FMO11206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9415055..9415361 | 1..309 | 98 | -> | Plus |
| 2R | 9416645..9416796 | 310..461 | 100 | -> | Plus |
| 2R | 9416858..9417082 | 462..686 | 99 | -> | Plus |
| 2R | 9417156..9417335 | 687..866 | 100 | -> | Plus |
| 2R | 9417395..9417575 | 867..1036 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:48 Download gff for
FMO11206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5304661..5304840 | 687..866 | 100 | -> | Plus |
| arm_2R | 5304900..5305080 | 867..1036 | 92 | -> | Plus |
| arm_2R | 5302560..5302866 | 1..309 | 98 | -> | Plus |
| arm_2R | 5304150..5304301 | 310..461 | 100 | -> | Plus |
| arm_2R | 5304363..5304587 | 462..686 | 99 | -> | Plus |
