Clone FMO11207 Report

Search the DGRC for FMO11207

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4404-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11207.5prime Sequence

950 bp (950 high quality bases) assembled on 2011-12-02

> FMO11207.5prime
CAGTCGACATGTGCTGGGTCGCAATGGCGCGCAAGGACGATCCCGTTTTC
AATGTGCGGTTCGTGCAGTTCGTGGAGAATCAGCCGTGCCTGTGGAACTA
CACGCATCCGGGCTACAGCAAGAAGGAGGATGTGCAGAGGGCGTGGCAGC
AGGTTGCCAACGATATCAAGGACACGGTTCGCAACTGTCGCGAGCGATGG
CGCACCATAAGGAGCAGCTTCCTGCGATCCCTGAAGCTGGCACGCACACA
AACGGGACGCGGCAAGCGCAAATACTACCTATCGAAGTATCTTCAGTTTC
TCGTTCCGTTCACCAAGTCGCGATCCTGCCACAAGCAGCTGCCGGGCATG
GTGCTCCGCAAACCCGGCCAAGCTGCCACTGCTCAGCAGGAAGATGAGGT
GGTGGCGGCGGAGGAGGAGGCCAAGGTGAGCGATGGTGAGATGCCGCTGG
ACGTTCAGGTGTCCGAGGAGGAGCATCGTCGTAATCAGGAACAGGATCGG
GAGCAACCCACCGCCTGTTTGCCGCTCCGCCTGCATTCCATCAAAGTGGA
GCACGATTCGTCAAATGCGAACCAGCAGCTGGAGCGGATGGTGAGCCAGC
AGTCGCTGGTCTCGGTGCCCGCCGCCGCGCTGGGCAATCACCTGGGCTGG
TCGGATCTGACGCAGTGGTTCAAGGGACATGGCAGCGGTCATCACAAGTT
AAACCACAACAACAACAACACCAACATCACCACCACCGCCGCCGCAGCCG
GCTACGTCAGCTCTAAGTGTTTTCACTGGCGGACCAGGAGGAAGTGGCTC
ACAACCGGATGCCGACTACTCCTTTCTGATCAGCCTGCATCCGTACATCA
AGGAGATGAACGGCAAGCAGAATCGAAAAGTTTCGACAGACGTCGTCTGA
CTCATCGACGATATTCTGGATAACAGGATGTCGCAAGCTTTCTAGACCCA

FMO11207.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4404-RA 1696 CG4404-RA 237..1161 8..932 4490 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12904288..12905035 925..177 3555 99.2 Minus
X 23542271 X 12905613..12905782 177..8 850 100 Minus
Blast to na_te.dros performed 2014-11-27 00:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2421 683..737 121 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2299..2379 669..748 114 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1575 707..761 112 71.4 Plus

FMO11207.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:32 Download gff for FMO11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 248..1184 1..941 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:54 Download gff for FMO11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 231..1167 1..941 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:42 Download gff for FMO11207.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 231..1167 1..941 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:42 Download gff for FMO11207.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12904274..12905034 178..941 98 <- Minus
X 12905613..12905788 1..177 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:54 Download gff for FMO11207.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12798307..12799067 178..941 98 <- Minus
arm_X 12799646..12799821 1..177 98   Minus