FMO11208.5prime Sequence
988 bp (988 high quality bases) assembled on 2011-12-02
> FMO11208.5prime
CAGTCGACATGTGGACAACGGACTGCCCGAGAGCGTTGAAAGCGATTTGC
TTGGTGCCGCTGTGGCTGCTCCTCTTCCTCGATTGCGGCATGGTCGGTGG
CGAGGTGCCGCCGCATTACTGGGAAACCCCGTACTCGCAGCCGTACTTCG
ACAACTCCTCGAGGCGTGAGGTCACCGCAACCGTCGGCCAGGCGGCCCTG
CTGCACTGCCGCGTCCGGAATCTGGGCGATCGAGCGGTGTCCTGGATAAG
GAAGCGCGACCTGCACATCCTGACGGTGGGAATACTAACGTACACAAACG
ACCAGCGCTTCCAGTCGCTGCACTCCGAGGGATCCGACGAGTGGACGCTG
CGCATCTCATCGCCGCAGCCGCGGGATTCGGGCACCTACGAGTGCCAGGT
GTCCACGGAGCCGAAGATCAGCCAAGGATTTCGCCTCAACGTTGTGTTGT
CACGGGCCAAGATCCTGGGCAACGCGGAGCTCTTCATCAAGAGCGGCAGC
GACATCAATCTCACCTGCCTGGCGATGCAGTCGCCGGTGCCGCCATCGTT
CATCTACTGGTACAAGGGCAAGCGGGTCATGAATTACTCGCAGCGCGGTG
GCATCAACGTCATCACGGAGCGTTCCACACGGACCAGCAAGCTGCTCATA
GCCAAGGCCACGCCGGCGGATTCGGGCAACTACACGTGCTCCCCGAGCAG
CTCAGATTCTGCCTCCGTGGTGGTGCACGTCATCAACGGGGAACATCCGG
CCGCCATGCAGCACGGCAACAGCAGCGCCACCTGCCTGCGCCCCTTTCAT
CCACGTCCGTGCCTTTCGTCCTTGCCACCTGGATGTCGATGACGGTGGCG
TCTGTCGCCTGGAACTCTACCTCAACATCAAACTGGAACTGGAGCCCCGA
CTGGCGCTGGCACTGGACCCTAATGATTTGGAGCAACCTGTCCGCTGTCT
AGTGGCATCTGGAGCTGGAGCGCAGCTTTCTAGACCAT
FMO11208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr4-RB | 2994 | CG33512-RB | 1004..1974 | 7..971 | 4600 | 98.8 | Plus |
| dpr5-RB | 1419 | CG5308-RB | 302..616 | 204..518 | 330 | 74.4 | Plus |
| dpr5-RA | 1817 | CG5308-RA | 700..1014 | 204..518 | 330 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11535583..11535840 | 705..448 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 11535970..11536180 | 446..236 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 11534503..11534777 | 971..703 | 955 | 95.7 | Minus |
| 3R | 32079331 | 3R | 11539099..11539256 | 238..81 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 11539907..11539981 | 81..7 | 375 | 100 | Minus |
| 3R | 32079331 | 3R | 11503537..11503754 | 204..421 | 310 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:45 has no hits.
FMO11208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:33 Download gff for
FMO11208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 998..1974 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:58 Download gff for
FMO11208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 998..1974 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:47 Download gff for
FMO11208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 998..1974 | 1..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:47 Download gff for
FMO11208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11535583..11535840 | 448..705 | 100 | <- | Minus |
| 3R | 11535969..11536179 | 237..447 | 99 | <- | Minus |
| 3R | 11539101..11539255 | 82..236 | 100 | <- | Minus |
| 3R | 11539907..11539987 | 1..81 | 95 | | Minus |
| 3R | 11534503..11534774 | 706..971 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:58 Download gff for
FMO11208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7360225..7360496 | 706..971 | 95 | <- | Minus |
| arm_3R | 7361305..7361562 | 448..705 | 100 | <- | Minus |
| arm_3R | 7361691..7361901 | 237..447 | 99 | <- | Minus |
| arm_3R | 7364823..7364977 | 82..236 | 100 | <- | Minus |
| arm_3R | 7365629..7365709 | 1..81 | 95 | | Minus |
