Clone FMO11212 Report

Search the DGRC for FMO11212

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptEip71CD-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11212.5prime Sequence

767 bp (767 high quality bases) assembled on 2011-12-02

> FMO11212.5prime
CAGTCGACATGTCTCTGACTATTACTTCCAGTGTCACTCATCCTGAGCTC
AAGGATCTGAGCACCGTTCGCAATGAACAAAAGGAACTGAACATTTCGCC
GGTTCACGATGTGAATGTCACAAAAGCCACGGCCACTTTCGGCATGGGTT
GCTTTTGGGGCGCAGAATCCCTGTATGGAGCCACCCGTGGAGTTTTGAGA
ACCACCGTGGGCTACGCCGGAGGCAGCTCGGATTTGCCAACGTACCGTAA
AATGGGCGATCATACGGAGGTGCTGGAAATCGACTATGATCCCACGGTCA
TTAGCTTTAAGGAGCTGCTGGATCTGTTCTGGAACAACCATGAGTATGGC
CTGACCACGCCCATCAAGAGGCAGTACTTTTTTCTTGATTCTGTACCACG
ATGAGGAGCAGAAGCAGGTGGCACACGCCTCCAAATTGGAGGAGCAATAG
CGCCGTGCACCGGAGATCATAACCACTGAGATTGCATCCAAGGAGAACTT
TTACCCAGCCGAGGCGTACCACCAGAAGTATAGGTTGCAGGGCCACAAGG
ATCTCGCCTCATCGCTAAATCTCAGCCCCAAACTGCTGCAGACCAGCTAT
GTGGCCACCAAACTGAAATGGCTACCTGGCCGGAGTCGGCGGCATCGAGC
AGTTTAAAGGCGGAGGCGGAGACCATGGGTCTGACGCCCACCCAGCGGCA
GTACTGCTACTACCACGTGGAGCAGAACGAGGGCCAGGGTCTCTACTGCG
CAAGCTTTCTAGACCAT

FMO11212.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Eip71CD-RG 980 CG7266-RG 67..805 8..749 3545 98.8 Plus
Eip71CD-RA 980 CG7266-RA 67..805 8..749 3545 98.8 Plus
Eip71CD-RB 968 CG7266-RB 67..793 8..749 3355 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15512476..15512739 254..518 1200 97.7 Plus
3L 28110227 3L 15512796..15513027 516..749 1070 99.1 Plus
3L 28110227 3L 15512171..15512366 59..254 965 99.5 Plus
3L 28110227 3L 15511118..15511169 8..59 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:17:29 has no hits.

FMO11212.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:28 Download gff for FMO11212.5prime
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 66..804 8..749 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:18 Download gff for FMO11212.5prime
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 67..805 8..749 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:18 Download gff for FMO11212.5prime
Subject Subject Range Query Range Percent Splice Strand
Eip71CD-RA 67..805 8..749 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:18 Download gff for FMO11212.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15512476..15512736 254..515 97 -> Plus
3L 15512796..15513027 516..749 99   Plus
3L 15511118..15511169 8..59 100 -> Plus
3L 15512172..15512365 60..253 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:18 Download gff for FMO11212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15504218..15504269 8..59 100 -> Plus
arm_3L 15505272..15505465 60..253 99 -> Plus
arm_3L 15505576..15505836 254..515 97 -> Plus
arm_3L 15505896..15506127 516..749 99   Plus