Clone FMO11213 Report

Search the DGRC for FMO11213

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:13
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9422-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11213.5prime Sequence

644 bp (644 high quality bases) assembled on 2011-12-02

> FMO11213.5prime
CAGTCGACATGATGCACTACCGCAAGGCCGAGAATGTGGAGAAGGAGCTG
AGCAAGAGCGATCTGCCATTCGAGGACTGCATGCCAAAGTCCCAAAAGGA
TTTTTTGTGGATGCATGTAAAAGGCGGTACCAAAGTGAGCAATGTGATTG
AGTTTGCTCAGGAGGCGCTGAACAAGGGCGAGCACAGATGCGTGGTGTGG
AGCGGATCCGGCGGAGGAGTGGTGAAGACCATATCCTGTGCCGAGGTCCT
CAAGCGGAGCCACCCCCTCTACCAGGTGACGCGCATGGCCTACACCAGTG
TGGAGGAGCACTGGAAGCCGCAAATGGAAGGCCTGGAGGAGATTATAGTC
ACACGCCAAATACCCACCCTGCACATCCTCATGAGTCTGGACGAGCTGCC
GGATACTATAGATGGCTTACAAAAGCCAAATACGTCCACTGATTTTTGGG
ATGGCGGAGGAGCACAGCAACAGCCACATCCACGTTCCCAGCCCCGCCAT
CAGCAGCAGCCACATAAACCAGGGGCTGGGCGTGGGGGTCGGCCGAACAA
ACGGACCAGACCCGGACGCAATAAACCAGGCCAACAACCCGAAAAACCTG
CCGCTGAAGAGAATTTACCCGCCAGTGCAAGCTTTCTAGACCAT

FMO11213.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9422-RD 1310 CG9422-RD 606..1223 9..626 3090 100 Plus
CG9422-RC 1388 CG9422-RC 112..729 9..626 3090 100 Plus
CG9422-RA 816 CG9422-RA 112..729 9..626 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6692292..6692503 415..626 1060 100 Plus
2R 25286936 2R 6691882..6692063 117..298 910 100 Plus
2R 25286936 2R 6692118..6692236 297..415 595 100 Plus
2R 25286936 2R 6691718..6691827 9..118 550 100 Plus
Blast to na_te.dros performed 2014-11-27 00:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2512 458..514 116 69 Plus

FMO11213.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:36 Download gff for FMO11213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9422-RC 72..696 1..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:20 Download gff for FMO11213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9422-RA 105..729 1..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:04 Download gff for FMO11213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9422-RA 105..729 1..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:04 Download gff for FMO11213.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6691711..6691825 1..116 96 -> Plus
2R 6691882..6692063 117..298 100 -> Plus
2R 6692120..6692236 299..415 100 -> Plus
2R 6692293..6692503 416..626 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:20 Download gff for FMO11213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2579216..2579330 1..116 96 -> Plus
arm_2R 2579387..2579568 117..298 100 -> Plus
arm_2R 2579625..2579741 299..415 100 -> Plus
arm_2R 2579798..2580008 416..626 100   Plus