FMO11216.5prime Sequence
1017 bp (916 high quality bases) assembled on 2011-12-02
> FMO11216.5prime
CAGTCGACATGCGTGACTGGATGCCAGTGCTCTTCTGCGGACTGTCCGTG
CCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCCAAGTTCTG
GAGCAGTGACTTTGAGGGTTATCCGACAGAGTCCCGGGTGATTCCGCCGG
TGCGCTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCT
CTGCGCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGT
GGCCTTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGG
TGTTCTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAA
CGCCGTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGAT
ACAGGTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATC
TGCTGGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATAC
CGATCCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAA
TGGCGACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATC
CAGTTTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGG
GTTTTCGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCG
GCTTTGGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTT
CTGATTAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGG
ACTTTTTTGGGTCCCTTTTGGACTCTGTCCTAGTGGTCTGCTGCAGTTCT
CGGGCATCAATGAGGAACGCAGATTGTGGATACCCTGGAAAGGGATTGCG
CACGTAGCGGACTGCGCATCTGTACAACCATATTGTCACCTGATTTCCAG
CATCGTTACCGGCGTCACCATTTCTCTCTGTCCAGAATTCAGGGCTGTGC
GCGCAACTTTCTAATAC
FMO11216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RB | 1845 | CG10171-RB | 134..1108 | 9..978 | 4570 | 98.5 | Plus |
| CG10171-RA | 1611 | CG10171-RA | 60..1022 | 9..978 | 4380 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13386745..13387611 | 978..117 | 3805 | 98.3 | Minus |
| 3L | 28110227 | 3L | 13387664..13387774 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:02 has no hits.
FMO11216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:38 Download gff for
FMO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 89..1085 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:34 Download gff for
FMO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 127..1123 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:14 Download gff for
FMO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 127..1123 | 1..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:14 Download gff for
FMO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13386730..13387610 | 118..990 | 97 | <- | Minus |
| 3L | 13387666..13387781 | 1..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:34 Download gff for
FMO11216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13379830..13380710 | 118..990 | 97 | <- | Minus |
| arm_3L | 13380766..13380881 | 1..117 | 97 | | Minus |
