Clone FMO11217 Report

Search the DGRC for FMO11217

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRoe1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11217.5prime Sequence

665 bp (665 high quality bases) assembled on 2011-12-02

> FMO11217.5prime
CAGTCGACATGTCAGCAAAGGCAGCCTTACCACTGCAGATGTTTGGCCGG
CGACTCGTCCACCTGAGGTCATCGGTCACTTCTCAAAATATGAGTGCCCT
GCGTTTGTACAGCACAGAGAAACAGCCGGAAGAAGCGACAGAGCAGAAGG
CCACCGAATCGTCGCCAGAAGTTGAGAAACTCACCAAGGAACTGGCCGCC
GCCAAGGAGCAGAATGCCGAGCTAATGGACAAATACAAGCGTTCGCTAGC
CGACAGCGAAAACATGAGGAACCGACTGAACAAACAGATCAGCGACGCCA
AGATCTTTGGCATCCAGAGCTTCTGCAAGGATCTGCTCGAGGTGGCGGAC
ACACTGGGACATGCCACACAGGCGGTGCCCAAGGTTAAGCTCAGCGGCAA
TGCTGATTTGAAGAACCTGTACGAGGGCCTCACCATGACGCGCGCCTCGC
TGCTGCAGGTGTTCAAGCGACACGGACTGGAGCCACTGGATCCCATCAAC
CAGAAGTTCGACCCCAATCAGCACGAGGCGCTGTTCCAGAAGGAGGACAA
GACCGTCGAGCCCAACACCGTGGTGGAGGTGACCAAGCTGGGCTACAAAC
TGCACGAGCGTTGCATACGTCCGGCCTTGGTGGGCGTGTCGAAGTGTGCA
AGCTTTCTAGACCAT

FMO11217.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Roe1-RA 1065 CG6155-RA 105..743 9..647 3180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13554385..13554681 93..389 1470 99.7 Plus
2R 25286936 2R 13555025..13555284 388..647 1300 100 Plus
2R 25286936 2R 13554181..13554266 9..94 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:20:19 has no hits.

FMO11217.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:39 Download gff for FMO11217.5prime
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 96..745 1..653 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:42 Download gff for FMO11217.5prime
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 101..750 1..653 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:18 Download gff for FMO11217.5prime
Subject Subject Range Query Range Percent Splice Strand
Roe1-RA 101..750 1..653 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:18 Download gff for FMO11217.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13554177..13554266 1..94 95 -> Plus
2R 13554387..13554681 95..389 99 -> Plus
2R 13555027..13555291 390..653 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:42 Download gff for FMO11217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9441682..9441771 1..94 95 -> Plus
arm_2R 9441892..9442186 95..389 99 -> Plus
arm_2R 9442532..9442796 390..653 98   Plus