FMO11217.5prime Sequence
665 bp (665 high quality bases) assembled on 2011-12-02
> FMO11217.5prime
CAGTCGACATGTCAGCAAAGGCAGCCTTACCACTGCAGATGTTTGGCCGG
CGACTCGTCCACCTGAGGTCATCGGTCACTTCTCAAAATATGAGTGCCCT
GCGTTTGTACAGCACAGAGAAACAGCCGGAAGAAGCGACAGAGCAGAAGG
CCACCGAATCGTCGCCAGAAGTTGAGAAACTCACCAAGGAACTGGCCGCC
GCCAAGGAGCAGAATGCCGAGCTAATGGACAAATACAAGCGTTCGCTAGC
CGACAGCGAAAACATGAGGAACCGACTGAACAAACAGATCAGCGACGCCA
AGATCTTTGGCATCCAGAGCTTCTGCAAGGATCTGCTCGAGGTGGCGGAC
ACACTGGGACATGCCACACAGGCGGTGCCCAAGGTTAAGCTCAGCGGCAA
TGCTGATTTGAAGAACCTGTACGAGGGCCTCACCATGACGCGCGCCTCGC
TGCTGCAGGTGTTCAAGCGACACGGACTGGAGCCACTGGATCCCATCAAC
CAGAAGTTCGACCCCAATCAGCACGAGGCGCTGTTCCAGAAGGAGGACAA
GACCGTCGAGCCCAACACCGTGGTGGAGGTGACCAAGCTGGGCTACAAAC
TGCACGAGCGTTGCATACGTCCGGCCTTGGTGGGCGTGTCGAAGTGTGCA
AGCTTTCTAGACCAT
FMO11217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roe1-RA | 1065 | CG6155-RA | 105..743 | 9..647 | 3180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13554385..13554681 | 93..389 | 1470 | 99.7 | Plus |
2R | 25286936 | 2R | 13555025..13555284 | 388..647 | 1300 | 100 | Plus |
2R | 25286936 | 2R | 13554181..13554266 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:19 has no hits.
FMO11217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:39 Download gff for
FMO11217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 96..745 | 1..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:42 Download gff for
FMO11217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 101..750 | 1..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:18 Download gff for
FMO11217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roe1-RA | 101..750 | 1..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:18 Download gff for
FMO11217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13554177..13554266 | 1..94 | 95 | -> | Plus |
2R | 13554387..13554681 | 95..389 | 99 | -> | Plus |
2R | 13555027..13555291 | 390..653 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:42 Download gff for
FMO11217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9441682..9441771 | 1..94 | 95 | -> | Plus |
arm_2R | 9441892..9442186 | 95..389 | 99 | -> | Plus |
arm_2R | 9442532..9442796 | 390..653 | 98 | | Plus |