Clone FMO11220 Report

Search the DGRC for FMO11220

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13188-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11220.5prime Sequence

1099 bp (1012 high quality bases) assembled on 2011-12-02

> FMO11220.5prime
CAGTCGACATGGTGTCGCGTCGAAAAATTCTATCACGTTCCCGCGACGAT
CTTAATCTCGACCAGACGTTCACCCAGCAGGAGGAGGAGGAGGATATCTG
GTTCCAGAAGGATAAACTATACAAGGAGCACATTCAGGAAGTGCTGGACA
AATGGACCCAAATCGACGACGAGATCTGGGCCAAAGTGATCGTCTTCGAG
CGGAATCGTCGCGTGGCCAAAGCGTACGCACGCGCCCCAGTGCTGACCAT
TAATGGATCCGACGATGGCTTCGACGGCATGCGAATTGGACTGTGCGGCT
TCGACAATCCGATGAGGGATCAGAAGACCGACGAGATGAAGCGCGTCATC
GGACAGGGTGTTAAAATCAAAATGGATGACGCTGGGAACATCCTCATCCG
GCGGTACGCCAAAAGCAATGTCTACGTGAAGAGTACCGCCAGCAGTCCCA
ACGAGGAGACCTCCATCGGTGCCGAGATCTTAAAGCTGCCAAATCAGGCG
CTCGAATCCGAAAAAATAGTCAAGCTCTTCGACATGAAGAAGTTCCAGTC
GAATGTGAATCGAGAACTGCGTCGCGCCTATCCGGATCGCCGCCGCTTGG
AGACGCAGTGCCTCTCCGCGGTGGCGTTTGTCAAGTCGGAGAACGACATC
TTGGAGTGCCCCATCTGGGTGCTCATCGTTAATGTGGTGGCCATGGATAT
GCTGAAGAGCAAACTGCCACCAGTGCAACGTCCCATTGTGGACATCAAGA
ACCGCCCGCGCATTCCGATTCCCGACGAGGATCCCTACAGCGTCGCTGGC
AACGGAAGTGGCGGTAGCTCCCGGCAGCTCTGGCTTCCGCAGTGGCCACC
AGGCGCAACTGCATCCGCAGCAACAGCTGGGGCAAGCAATCTCAATGGCA
ACGGTGGAGGACATGTGTCCGCCACGCGGAAGCAGCTGCTGCTGCAGAAC
GCAACAACTGGCCCACAAGCGCAGCGGAGAAACCTTCCGAAACTACGCCC
AGGGATAATATCTACTTCGCACGGATCTGAATTCCAAAGCCGAACTACGA
ATGAAATTCGATTGAGAACCGTATCAAACTGGCTCTCCGCGTAAATAGA

FMO11220.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13188-RB 2842 CG13188-RB 707..1775 9..1085 4955 98.1 Plus
CG13188-RA 4532 CG13188-RA 707..1775 9..1085 4955 98.1 Plus
CG13183-RA 2211 CG13183-RA 540..811 159..430 325 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11962670..11962961 720..1016 1095 96.6 Plus
2R 25286936 2R 11962375..11962575 523..723 1005 100 Plus
2R 25286936 2R 11962101..11962270 355..524 850 100 Plus
2R 25286936 2R 11955583..11955742 124..283 800 100 Plus
2R 25286936 2R 11950073..11950190 9..126 590 100 Plus
2R 25286936 2R 11961682..11961756 283..357 375 100 Plus
2R 25286936 2R 11906133..11906233 259..159 235 82.2 Minus
Blast to na_te.dros performed on 2014-11-27 00:20:46 has no hits.

FMO11220.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:41 Download gff for FMO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13188-RB 772..1857 1..1096 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:55 Download gff for FMO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13188-RA 699..1784 1..1096 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:30 Download gff for FMO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13188-RA 699..1784 1..1096 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:30 Download gff for FMO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11962674..11962981 724..1039 95 -> Plus
2R 11950065..11950189 1..125 96 -> Plus
2R 11955585..11955742 126..283 100 -> Plus
2R 11961683..11961755 284..356 100 -> Plus
2R 11962103..11962270 357..524 100 -> Plus
2R 11962377..11962575 525..723 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:55 Download gff for FMO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7849882..7850080 525..723 100 -> Plus
arm_2R 7837570..7837694 1..125 96 -> Plus
arm_2R 7843090..7843247 126..283 100 -> Plus
arm_2R 7849188..7849260 284..356 100 -> Plus
arm_2R 7849608..7849775 357..524 100 -> Plus
arm_2R 7850179..7850486 724..1039 95 -> Plus