FMO11221.5prime Sequence
1094 bp (957 high quality bases) assembled on 2011-12-02
> FMO11221.5prime
CAGTCGACATGCCGCCCGTGCAAGTCCAGGCAGCGAACATGTCGCTGGGT
GCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGACTGAGAAGAT
TGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCGTATGTGCCC
AGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCGAGGGCCGT
AAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTGCTGCAACAA
GTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGTCAGCTAGCT
GGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAGCTGGCTGAT
TGCGGATTCATCAAGAACCAGAACCGCTTTCTTGTGTCACGAGTGCAATG
CCAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAAAATGCCAC
GGCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTGTACCACGG
CTATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTCCACTGCTC
GGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGAACGAACTG
TATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGTGGTGCCTG
TCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAAGCACTGGC
ATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTTCTTGGGTCA
CCGACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCACTATCATC
AGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTTATTGGAGTCGA
TGTTTTCACTGCCTTGAACAAGGCCTGTTGTGTGCACAACTTTGCGTGCT
CCGTGTGCGACACGAAGATGACACAAATCGAATTTCTACGAGTACGACGA
GAAGCTGGTGTGCAAAAGTGCTATGACGATTTCCAAACGAACCTCAGACG
ACGTCTGCGCACCGCCACGAGATGACAATGAATAGACCCCGCAGTCTTTC
TAGAACATTCGTTGCGCGCGGGGTCCAGGTACTGGTCATAAACT
FMO11221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RD | 1500 | CG7954-RD | 225..1249 | 9..1032 | 4825 | 98.4 | Plus |
| stck-RB | 1388 | CG7954-RB | 113..1137 | 9..1032 | 4825 | 98.4 | Plus |
| stck-RC | 1335 | CG7954-RC | 78..1088 | 23..1032 | 4755 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 143..449 | 1455 | 99 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 591..852 | 1195 | 98.9 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 450..591 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359713 | 852..1032 | 605 | 94.6 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 23..142 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:55 has no hits.
FMO11221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:42 Download gff for
FMO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 103..1133 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:00 Download gff for
FMO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 107..1137 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:33 Download gff for
FMO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 107..1137 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:33 Download gff for
FMO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8358471..8358590 | 23..142 | 100 | -> | Plus |
| 3R | 8358649..8358954 | 143..449 | 99 | -> | Plus |
| 3R | 8359009..8359150 | 450..591 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 592..852 | 98 | -> | Plus |
| 3R | 8359530..8359713 | 853..1032 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:00 Download gff for
FMO11221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184193..4184312 | 23..142 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 143..449 | 99 | -> | Plus |
| arm_3R | 4184731..4184872 | 450..591 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 592..852 | 98 | -> | Plus |
| arm_3R | 4185252..4185435 | 853..1032 | 94 | == | Plus |
