FMO11222.5prime Sequence
1106 bp (1016 high quality bases) assembled on 2011-12-02
> FMO11222.5prime
CAGTCGACATGTATCTAGAGCTCTTTGCGATTCTCCTGGCGACCGCTTTG
GCGTGGGATTATATGCGAAAGAGGCGGCACAACAAGATGTACGCCGAGGC
TGGGATACGAGGACCCAAGAGCTATCCTCTGGTTGGAAACGCTCCCTTGT
TGATTAACGAGTCACCCAAGACTATCTTTGATATGCAGTTCCGACTGATT
GCTGAGTTTGGTAAAAACATAAAAACGCAGATGTTGGGCGAAAGTGGCTT
CATGACCGCTGATTCCAAAATGATCGAGGCGATCATGAGCAGCCAACAGA
CCATTCAAAAAAACAATCTTTATAGTCTGCTGGTAAATTGGCTCGGCGAT
GGACTGCTCATTAGCCAAGGAAAGAAGTGGTTCCGCCGCAGGAAGATCAT
TACACCCGCATTCCACTTTAAGATCCTCGAGGACTTTGTGGAGGTCTTTG
ACCAACAGAGCGCAACTATGGTCCAGAAGCTTTACGATCGGGCAGACGGC
AAGACGGTGATAAACATGTTCCCGGTGGCTTGCTTGTGTGCCATGGATAT
CATTGCGGAAACGGCCATGGGTGTAAAAATTAATGCTCAGCTCCAGCCGC
AATTTACCTACGTTCAGTCGGTCACAACTGCCTCTGCAATGTTAGCCGAA
CGCTTCATGAATCCCTTGCAGCGCTTGGATTTCACCATGAAGCTCTTCTA
TCCCAAATTGCTAGACAAGCTGAATGATGCCGTGAAGAACATGCACGACT
TTACAACTCGGTAATCACTGAGCGACGCGAGCTCCTACAAAAAGCCATTG
CCGATGGAGGAGATGCCGACGCTGCCCTCTTGAACGATGTGGGCCAGAAG
CGTCGTATGGCTCTTTCTTGATGTGCTGCTGAAGTCCACCATCGATGGGG
CTTCCGTTGAGCACCGACGACATCCCGCGAGGAGGTAGACACCTTTCATG
TTCGAGGGTCTTGACACTTACGACCCAGTAGCATTGCTTTTACCTGTTAT
TTTGCTGGCTCGACATCCTGAAGGTCCAGGCTCGCTTCTTTCAGGAAGGT
CAAAAAGGTTATCCGGTGAATGAACTGTCTGTCTCCATTTACTCATTGTA
AGCTTA
FMO11222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d14-RA | 1685 | CG3540-RA | 78..1131 | 7..1069 | 4925 | 98.2 | Plus |
| Cyp4d14-RB | 1694 | CG3540-RB | 78..1140 | 7..1069 | 4825 | 97.4 | Plus |
| Cyp4d2-RB | 2467 | CG3466-RB | 1722..1845 | 840..967 | 255 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2174464..2174920 | 628..172 | 2285 | 100 | Minus |
| X | 23542271 | X | 2173990..2174400 | 1046..629 | 1570 | 96.7 | Minus |
| X | 23542271 | X | 2175074..2175238 | 171..7 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:04 has no hits.
FMO11222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:34 Download gff for
FMO11222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 70..1113 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:07 Download gff for
FMO11222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 72..1115 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:53 Download gff for
FMO11222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 72..1115 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:53 Download gff for
FMO11222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2173985..2174400 | 629..1052 | 96 | <- | Minus |
| X | 2174464..2174920 | 172..628 | 100 | <- | Minus |
| X | 2175074..2175244 | 1..171 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:07 Download gff for
FMO11222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2068018..2068433 | 629..1052 | 96 | <- | Minus |
| arm_X | 2068497..2068953 | 172..628 | 100 | <- | Minus |
| arm_X | 2069107..2069277 | 1..171 | 97 | | Minus |
