FMO11223.5prime Sequence
1018 bp (845 high quality bases) assembled on 2011-12-02
> FMO11223.5prime
CAGTCGACATGTGTGACGATGATGCGGGTGCATTAGTTATCGACAACGGA
TCGGGCATGTGCAAAGCCGGCTTCGCCGGTGATGACGCTCCCCGTGCTGT
CTTCCCCTCAATTGTGGGTCGTCCCCGACACCAGGGTGTGATGGTGGGTA
TGGGTCAGAAGGACTCGTACGTGGGCGACGAGGCGCAAAGCAAGCGCGGT
ATCCTGACGCTGAAGTACCCCATCGAGCACGGCATCATCACGAACTGGGA
CGACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGCGTGG
CCCCCGAGGAGCATCCAGTATTATTGACCGAGGCTCCACTGAACCCCAAG
GCCAATCGCGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACTCGCC
GGCCATGTACGTGGCCATCCAGGCCGTGCTCTCCCTGTACGCCTCCGGTC
GTACCACCGGTATTGTGCTGGACTCCGGCGATGGTGTCTCCCACACCGTG
CCCATCTATGAGGGCTTCGCCCTGCCCCACGCCATTCTGCGTCTGGATCT
GGCTGGTCGCGATCTGACCGATTACCTGATGAAGATCCTGACGGAGCGCG
GCTACAGCTTCACCACCACCGCCGAGCGTGAGATCGTGCGCGACATCAAG
GAGAACTGTGCTACGTGGCTCTTGGACTTCGAGCAAGAGATGGCCACCGC
TTGCCGCCTCCACCTCGCTGGAGAAGTCGTACGAGTTGCCTGACGGCCAG
GTGATCACCATTGGCAACGAGCGCTTCCGCTGCCCCGAGGCTCTGTTCCA
GCCCTCGTTCTGGGCATGGAATCGTGCGGCATCACAAACCGTCTTAAACT
CGATCATGAATGCGACGTGGACATCCGCAGGATTCTGTATGCCAACTCTG
TGCTGTCCGGCGGTACCACATGTACCCTGGTATTGCCGATTGTTGCAAAT
GAGATCACTGGCCCTGGCCCATTCTAACATCAAGACCAGATCATTGCTCC
CACCGAGAAGGATGTATC
FMO11223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act88F-RA | 1595 | CG5178-RA | 95..1100 | 9..1008 | 4475 | 97.1 | Plus |
| Act79B-RB | 1619 | CG7478-RB | 175..1133 | 42..994 | 2935 | 88 | Plus |
| Act79B-RA | 1543 | CG7478-RA | 99..1057 | 42..994 | 2935 | 88 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15440616..15441543 | 9..932 | 4135 | 98.1 | Plus |
| 3L | 28110227 | 3L | 21985384..21986258 | 42..913 | 2735 | 89.1 | Plus |
| 3R | 32079331 | 3R | 13426604..13427539 | 9..940 | 2555 | 86.6 | Plus |
| 2R | 25286936 | 2R | 20944849..20945739 | 54..940 | 2510 | 87.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:14 has no hits.
FMO11223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:35 Download gff for
FMO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 68..1042 | 1..970 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:18:11 Download gff for
FMO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 87..1061 | 1..970 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:57 Download gff for
FMO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 87..1061 | 1..970 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:57 Download gff for
FMO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15440608..15441540 | 1..929 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:18:11 Download gff for
FMO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11266330..11267262 | 1..929 | 97 | -> | Plus |
