FMO11225.5prime Sequence
912 bp (910 high quality bases) assembled on 2011-12-02
> FMO11225.5prime
CAGTCGACATGTACGAGATTCATAATTGCCTAAGGTCCGTTTTCTTAGCC
ACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGGTGGG
TCTGCGATGTCTGCAAGCTTGTCTGCTGATCTTCTTCCTGATCTTCGTGG
TCCTACCGTTGATCTTTCGGTATTCCGTAACGTTCCAGCGTGGCATCCTA
TTTCTGACATTTATTAAGTATCCCAAAGGACTTGATCTCACCAAGCCGGA
AAGCGTGGGTCTTTATGCCACACGAAACTTCTACATAACCGTAAAGGATC
ACGATCAGGACGAGGATGGAGTGCGAGTTGGTGTGTGGCACGTGCTGCCC
AGCAATGCAGTGCGTCGTTTTAAGCGCGAACTGCGCGTGGAGGAGGAAGT
GGCCCAGGACCCGGATCAGCAGCTGGATCCTGCACCTGGCAACGTACTCG
AGCTGAAGGAGCTATCGCCAGCCATACGATCTGAATTTCCCGTCGTGCTG
CCGGAAAACGAGCAGCTCTTCTATGAGCGATTGCTGCGGATGCCCGGCGG
TACTGTGGTCCTCTATCTTCATGGGAACACAGCCAGCCGGGGCAGTGGTC
ACCGATCGGAGGTGTATAAGCTACTGCGAAAGCTCAACTATCATGTGTTC
TCCTTCGACTACAGAGGCTATGCCGACTCCGATCCCGTACCTCCGACGGA
GGAAGGCGTTGTGCGCGATGCCATGATGGTTTTTGAATACATAGCCAACA
CCACCTCCAATCCGATTGTGGTCTGGGGCCATTCCCTTGGGCACCCGGAG
TGGCCACGCATCTGTGCGCCAAGCTAGCCTAGCCTACGGGAAAGGGCTCC
CAGGGGAGTGATCTTCGAAAGCCCGTTCACCAACATTCGGGACGAGATAC
GCATGCATCCCT
FMO11225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15111-RB | 1772 | CG15111-RB | 409..1307 | 9..910 | 4390 | 99.3 | Plus |
| CG15111-RA | 1563 | CG15111-RA | 286..1098 | 95..910 | 3960 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19139876..19140569 | 214..910 | 3295 | 98.9 | Plus |
| 2R | 25286936 | 2R | 19139694..19139822 | 95..223 | 630 | 99.2 | Plus |
| 2R | 25286936 | 2R | 19139264..19139350 | 9..95 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:21:27 has no hits.
FMO11225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:44 Download gff for
FMO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15111-RB | 396..1304 | 1..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:20 Download gff for
FMO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15111-RB | 401..1309 | 1..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:49 Download gff for
FMO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15111-RB | 401..1309 | 1..912 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:49 Download gff for
FMO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19139256..19139349 | 1..94 | 96 | -> | Plus |
| 2R | 19139694..19139812 | 95..213 | 100 | -> | Plus |
| 2R | 19139876..19140571 | 214..912 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:20 Download gff for
FMO11225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15026761..15026854 | 1..94 | 96 | -> | Plus |
| arm_2R | 15027199..15027317 | 95..213 | 100 | -> | Plus |
| arm_2R | 15027381..15028076 | 214..912 | 98 | | Plus |
