FMO11227.5prime Sequence
1024 bp (952 high quality bases) assembled on 2011-12-02
> FMO11227.5prime
CAGTCGACATGAGACTGCACTTGGCCCTGATCCTTGGATTTTGCCTAGTT
GGCTGGGCCCGCTCGCAGGGCACCAAGTACGGACTGTGGACTCCGGATCG
GGCGCACTCCGATTCTCAGCCCATCCAGTGGACGGGCGGGCAATTCGAGT
TCCCATGCGCCAGTACCAAGTCGCTCTTCAAGAGCTCCGGAAAGTTTATA
CCCAAGAATGTGATTGCCACGCGGGCGCAGCTCATTGGAGACACCATCTA
TCTGGCTCTGCCGCGCTACAGGAAGGGAGTTCCGGCCACGCTGGTGAAGA
CCAGTATCAAGCCGGGCACCTGCTCCACCACCTTTAAGCCCTATCCCTGC
TGGGACCTCCAGGAGGAGGGCAACTGCAAGGCTCTGCAATCGGTGGTGGA
TCTGGTGGTAGACCAAAACGAGGTGCTCTGGGTCTTGGACACGGGCATAG
TGAACACTCTGGAGACTCCGGTGCGCAAGTGCCCACCAAAAGTGGTGGCC
ATGTCGGTGAAGACTGGCAAGGTTCTGAAGACCGTCTCGCTGGAGGGCCT
GACTTCCAGCAATTCCCGTCTCCAATATCTGGTAGTGGACTATGCTCCGG
ATGGCGGCTGCTTTGTCTACGTCAGCGATGCCGCCAATCGGGCCATCATC
GTGTACAATCTCCAGGCGGATCGGGGGATTCAGGGTGGTGCTGCCCAAGG
CCGTTACCGCCGGCTGTCGGTCGAGGGATGTCCTCTACATAGCCCTCATC
CGCCGGGACTGCGGCTCAACGGAACTGTACTTCACCTACCTGAGCACCAA
CAAACTGTTCTCCCTGAAGTCAGAGTATCTGAGGAGTGGAGTGGCCGATG
GACGCATCTTGGATCTCGGCAAGAAACCCAGTCGCATGGTCATCATCGGC
AACGAACAACGGCTCGGCGATCTTCTTCCGCAACGAGGGCGACGCGGAAG
GTGTACCGTTGGGACACGAACTCACATTCTGGAGGCCAACCTTCAAGCCG
GTTTACCGCAACAGACCTGCCAGC
FMO11227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g2-RA | 1431 | CG13804-RA | 49..1063 | 9..1024 | 4860 | 98.9 | Plus |
| yellow-g-RA | 1344 | CG5717-RA | 439..564 | 339..464 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2276598..2277450 | 9..862 | 4220 | 99.9 | Plus |
| 3L | 28110227 | 3L | 2277508..2277670 | 862..1024 | 470 | 94 | Plus |
| 3L | 28110227 | 3L | 2272270..2272331 | 400..339 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:39 has no hits.
FMO11227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:46 Download gff for
FMO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1063 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:26 Download gff for
FMO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1063 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:53 Download gff for
FMO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1063 | 1..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:53 Download gff for
FMO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2276590..2277450 | 1..862 | 99 | -> | Plus |
| 3L | 2277509..2277670 | 863..1024 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:26 Download gff for
FMO11227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2276590..2277450 | 1..862 | 99 | -> | Plus |
| arm_3L | 2277509..2277670 | 863..1024 | 93 | | Plus |
