FMO11234.5prime Sequence
1014 bp (941 high quality bases) assembled on 2011-12-02
> FMO11234.5prime
CAGTCGACATGGGAAGAAATTTCCTTCGTCTGCCCAGTGTGAGTGGTAGA
AGCTCATTCGTATATTCCATAGTCGCCTGTTCAAATCTTCCCAAGCGACG
GAGCATTGTGCTCAGTTTTGGCCACATTATGACCGAGAACATGACGCTCG
AACAGCTGTCCGCAAATAAGTGCTTCGAGGGCGAGCAACGCGTGTATCGC
CATCGCTCGGACACCTTGAAGTGCGACATGACCTTTGGCGTCTTCCTGCC
GCCGGCCGCTTTGGAGGGTAAACCGTGTCCGGTGCTGTTCTTCCTCAGCG
GACTGACCTGCACGCATGAGAACTTCATCCAGAAGAGCGGATTCCAGCAG
CACGCCGCCCGCCACAACCTGATCGTCGTCAATCCGGACACTTCGCCCAG
GGGCGTGGAAATTGCCGGCCAAGATGATGCATACGACTTTGGAAGCGGGG
CTGGATTCTATGTGGATGCAAAGGAGGAGCCGTGGTCGAAGCACTACAAG
ATGTACAGCTATGTGACCCAGGAGCTGGTGGATGTGGTCAATGCCAATCT
GCCCGTGGTTCCCGGTAAACGCGGTATATTCGGCCACAGTATGGGCGGCC
ACGGAGCCCTGATCTGCGCGCTTAAGAATCCCGGGCTGTACCAGTCGGTG
TCCGCTTTTGCGCCGATTGCCAATCCCACCGAGTGCCCGTGGGGCAAGAA
GGCCTTTGCCGGCTATCTGGGCTCCAATCCGGATGACTGGGGCCCTGTGG
GATGCCACGCATCTGGTGTCGCAGTACGAGAGCACTCCGCAGAGCTCTTT
ATCGACAAAGGTGCAGCAGACAACTTCCTGCCGGCAAGCAGCTGCTGCCG
GAAAACTGCTGGCTGCCGCATATGGCAACGATCACATCCAGACCATTTTC
AAGCAGCGCGAGGGATACGATCACAGCTACTTCTACATCGCCACGTTCGT
CGCCGAACACTCGACTACATGCCGCCTTGCTCACAGCTTCCGCCGTCAAG
CTTTCTAGACCATT
FMO11234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 1141 | CG4390-RB | 56..1044 | 9..993 | 4680 | 98.6 | Plus |
| CG4390-RA | 1006 | CG4390-RA | 50..909 | 138..993 | 4035 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056515..20057376 | 993..136 | 3895 | 98.4 | Minus |
| 3R | 32079331 | 3R | 20059567..20059695 | 137..9 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:21:03 has no hits.
FMO11234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:42 Download gff for
FMO11234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 69..1059 | 6..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:05 Download gff for
FMO11234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 69..1059 | 6..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:37 Download gff for
FMO11234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 54..1044 | 6..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:37 Download gff for
FMO11234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056515..20057374 | 138..993 | 98 | <- | Minus |
| 3R | 20059567..20059697 | 6..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:05 Download gff for
FMO11234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882237..15883096 | 138..993 | 98 | <- | Minus |
| arm_3R | 15885289..15885419 | 6..137 | 99 | | Minus |
