Clone FMO11235 Report

Search the DGRC for FMO11235

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:35
Vector:pMK33-CFH-BD
Associated Gene/TranscriptmRpL28-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11235.5prime Sequence

930 bp (930 high quality bases) assembled on 2011-12-02

> FMO11235.5prime
CAGTCGACATGGCACACGCCACGCCACAGGGCGTAAAGCTATTAAACGGA
TGGAAGCGTCCGGGTCGCTTTGACAAGGGTCTGGGAGCCCAGCTGCCCGA
GGCGTACAGGAAGTTCTGGCGCGAGTGGAAGCTGACGACCCCGGCTGCGG
TCCATTATATCCCCAAGGAGCAGCAGTGGGAACGAGATGAGGTGACGCAC
GCCATCAAGCCGGTGCAGAACATCCCGCTGCCATTGATCGATACGCCGGA
ATCGCACCGTGGCATCTGGGGTGGCGAGGCCGTGATCAAGGGCTTTCAGA
AACGCGAGCAAACAAAGCGTCGCGTGCCGCACTTTTGGGTACCAAATCTT
AGGCGTTCGGTGGTCCATAGTCATGTGCTGGACTGCTACATGTCCGTGGT
GGTGACGGAACGCACGCTGGAGCAGATCCATGAATGTCATGGCTTTGATC
ACTACCTCCTCAAGAATCGTGCCTGCGATCTTCGCTCCGCTTTGGCTCTG
AAACTCAAGCGAGAGGTGCTTCAGGCCCTGCAGAACGGTGTTCCAGCCCT
CGCCGACGAGCCCGAACGCCAACAGGAAGTGCTTAAGGAATACCGCCGCT
ATCTGGAACCATATACGCCCGAGGAAATCGATTGGTACGGCCATACCTAT
TTGGAGGCCATACGCAAGCTGCAAAAGCAGCTGCGCGAAGCGGAAAAAGT
GGTGCCGCATAAGTTGGAGTTCCGCGGAAAGCTTATCGAGCAGCTGCGCC
AGGCGGGGATCAGCGAAGCGGGAAAGCTGGAGAAGCCGGATGCATTAGCA
GCAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCGCTTACAAG
CTGGAATCCTCCCCCTCTTCAGTTGGCTGTCTAAAATCAATCCTTTCGGC
AAGAAAGAAACCGCAAGCTTTCTAGACCAT

FMO11235.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL28-RB 1170 CG3782-RB 162..1067 9..912 4465 99.7 Plus
mRpL28-RA 1138 CG3782-RA 162..1067 9..912 4465 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4974274..4975096 27..849 4100 99.9 Plus
2L 23513712 2L 4975153..4975213 853..912 255 98.4 Plus
Blast to na_te.dros performed on 2014-11-27 00:21:11 has no hits.

FMO11235.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:43 Download gff for FMO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL28-RA 160..1065 9..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:10 Download gff for FMO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL28-RA 162..1067 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:42 Download gff for FMO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL28-RA 162..1067 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:42 Download gff for FMO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4974137..4974157 9..29 100 -> Plus
2L 4974277..4975100 30..852 99 -> Plus
2L 4975153..4975213 853..912 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:10 Download gff for FMO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4974137..4974157 9..29 100 -> Plus
arm_2L 4974277..4975100 30..852 99 -> Plus
arm_2L 4975153..4975213 853..912 98   Plus