FMO11235.5prime Sequence
930 bp (930 high quality bases) assembled on 2011-12-02
> FMO11235.5prime
CAGTCGACATGGCACACGCCACGCCACAGGGCGTAAAGCTATTAAACGGA
TGGAAGCGTCCGGGTCGCTTTGACAAGGGTCTGGGAGCCCAGCTGCCCGA
GGCGTACAGGAAGTTCTGGCGCGAGTGGAAGCTGACGACCCCGGCTGCGG
TCCATTATATCCCCAAGGAGCAGCAGTGGGAACGAGATGAGGTGACGCAC
GCCATCAAGCCGGTGCAGAACATCCCGCTGCCATTGATCGATACGCCGGA
ATCGCACCGTGGCATCTGGGGTGGCGAGGCCGTGATCAAGGGCTTTCAGA
AACGCGAGCAAACAAAGCGTCGCGTGCCGCACTTTTGGGTACCAAATCTT
AGGCGTTCGGTGGTCCATAGTCATGTGCTGGACTGCTACATGTCCGTGGT
GGTGACGGAACGCACGCTGGAGCAGATCCATGAATGTCATGGCTTTGATC
ACTACCTCCTCAAGAATCGTGCCTGCGATCTTCGCTCCGCTTTGGCTCTG
AAACTCAAGCGAGAGGTGCTTCAGGCCCTGCAGAACGGTGTTCCAGCCCT
CGCCGACGAGCCCGAACGCCAACAGGAAGTGCTTAAGGAATACCGCCGCT
ATCTGGAACCATATACGCCCGAGGAAATCGATTGGTACGGCCATACCTAT
TTGGAGGCCATACGCAAGCTGCAAAAGCAGCTGCGCGAAGCGGAAAAAGT
GGTGCCGCATAAGTTGGAGTTCCGCGGAAAGCTTATCGAGCAGCTGCGCC
AGGCGGGGATCAGCGAAGCGGGAAAGCTGGAGAAGCCGGATGCATTAGCA
GCAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCGCTTACAAG
CTGGAATCCTCCCCCTCTTCAGTTGGCTGTCTAAAATCAATCCTTTCGGC
AAGAAAGAAACCGCAAGCTTTCTAGACCAT
FMO11235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL28-RB | 1170 | CG3782-RB | 162..1067 | 9..912 | 4465 | 99.7 | Plus |
mRpL28-RA | 1138 | CG3782-RA | 162..1067 | 9..912 | 4465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4974274..4975096 | 27..849 | 4100 | 99.9 | Plus |
2L | 23513712 | 2L | 4975153..4975213 | 853..912 | 255 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:21:11 has no hits.
FMO11235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:43 Download gff for
FMO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL28-RA | 160..1065 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:19:10 Download gff for
FMO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL28-RA | 162..1067 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:42 Download gff for
FMO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL28-RA | 162..1067 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:42 Download gff for
FMO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4974137..4974157 | 9..29 | 100 | -> | Plus |
2L | 4974277..4975100 | 30..852 | 99 | -> | Plus |
2L | 4975153..4975213 | 853..912 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:19:10 Download gff for
FMO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4974137..4974157 | 9..29 | 100 | -> | Plus |
arm_2L | 4974277..4975100 | 30..852 | 99 | -> | Plus |
arm_2L | 4975153..4975213 | 853..912 | 98 | | Plus |